Gene : Phvul.001G199500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12323 - SR-RELATED CTD ASSOCIATED FACTOR 6 Genomic Order:  1976
Name:  ? Phvul.001G199500 Secondary Identifier:  ? PAC:37170157
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G199500 0.5kb upstream 0.5kb upstream 4694 true Chr01: 45840879-45845572 Phaseolus vulgaris
Phvul.001G199500 0.5kb upstream 0.5kb upstream 500 false Chr01: 45840879-45841378 Phaseolus vulgaris
Phvul.001G199500 0.5kb downstream 0.5kb downstream 4694 true Chr01: 45841379-45846072 Phaseolus vulgaris
Phvul.001G199500 0.5kb downstream 0.5kb downstream 500 false Chr01: 45845573-45846072 Phaseolus vulgaris
Phvul.001G199500 1.0kb upstream 1.0kb upstream 5194 true Chr01: 45840379-45845572 Phaseolus vulgaris
Phvul.001G199500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 45840379-45841378 Phaseolus vulgaris
Phvul.001G199500 1.0kb downstream 1.0kb downstream 5194 true Chr01: 45841379-45846572 Phaseolus vulgaris
Phvul.001G199500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 45845573-45846572 Phaseolus vulgaris
Phvul.001G199500 2.0kb upstream 2.0kb upstream 6194 true Chr01: 45839379-45845572 Phaseolus vulgaris
Phvul.001G199500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 45839379-45841378 Phaseolus vulgaris
Phvul.001G199500 2.0kb downstream 2.0kb downstream 6194 true Chr01: 45841379-45847572 Phaseolus vulgaris
Phvul.001G199500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 45845573-45847572 Phaseolus vulgaris
Phvul.001G199500 5.0kb upstream 5.0kb upstream 9194 true Chr01: 45836379-45845572 Phaseolus vulgaris
Phvul.001G199500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 45836379-45841378 Phaseolus vulgaris
Phvul.001G199500 5.0kb downstream 5.0kb downstream 9194 true Chr01: 45841379-45850572 Phaseolus vulgaris
Phvul.001G199500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 45845573-45850572 Phaseolus vulgaris
Phvul.001G199500 10.0kb upstream 10.0kb upstream 14194 true Chr01: 45831379-45845572 Phaseolus vulgaris
Phvul.001G199500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 45831379-45841378 Phaseolus vulgaris
Phvul.001G199500 10.0kb downstream 10.0kb downstream 14194 true Chr01: 45841379-45855572 Phaseolus vulgaris
Phvul.001G199500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 45845573-45855572 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309083 5265 Fabidae View MSA
124061186 5270 Rosid View MSA
123740040 5271 Pentapetalae View MSA
122786673 5272 Eudicot View MSA
122044059 5273 Angiosperm View MSA
121346189 5274 Embryophyte View MSA
123424893 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.67967 0.0 25.479   Low
cufflinks 19.4138 0.0 50.1863   High
cufflinks 13.9162 0.0 36.0677    
cufflinks 12.5799 0.0 32.7181    
cufflinks 17.1816 0.0 44.4177    
cufflinks 15.8179 0.0 40.9236    
cufflinks 13.3381 0.0 34.5934    
cufflinks 12.7612 0.0 33.1238    
cufflinks 15.9481 0.0 41.2517    
cufflinks 20.826 0.0 53.8634   High
cufflinks 19.489 0.0 50.3781   High

0 Strain