Gene : Phvul.002G041000 P. vulgaris v2.1
Defline:  (1 of 1) PF08378 - Nuclease-related domain (NERD) Genomic Order:  410
Name:  ? Phvul.002G041000 Secondary Identifier:  ? PAC:37177442
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G041000 0.5kb upstream 0.5kb upstream 5351 true Chr02: 3898428-3903778 Phaseolus vulgaris
Phvul.002G041000 0.5kb upstream 0.5kb upstream 500 false Chr02: 3903279-3903778 Phaseolus vulgaris
Phvul.002G041000 0.5kb downstream 0.5kb downstream 5351 true Chr02: 3897928-3903278 Phaseolus vulgaris
Phvul.002G041000 0.5kb downstream 0.5kb downstream 500 false Chr02: 3897928-3898427 Phaseolus vulgaris
Phvul.002G041000 1.0kb upstream 1.0kb upstream 5851 true Chr02: 3898428-3904278 Phaseolus vulgaris
Phvul.002G041000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3903279-3904278 Phaseolus vulgaris
Phvul.002G041000 1.0kb downstream 1.0kb downstream 5851 true Chr02: 3897428-3903278 Phaseolus vulgaris
Phvul.002G041000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3897428-3898427 Phaseolus vulgaris
Phvul.002G041000 2.0kb upstream 2.0kb upstream 6851 true Chr02: 3898428-3905278 Phaseolus vulgaris
Phvul.002G041000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3903279-3905278 Phaseolus vulgaris
Phvul.002G041000 2.0kb downstream 2.0kb downstream 6851 true Chr02: 3896428-3903278 Phaseolus vulgaris
Phvul.002G041000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3896428-3898427 Phaseolus vulgaris
Phvul.002G041000 5.0kb upstream 5.0kb upstream 9851 true Chr02: 3898428-3908278 Phaseolus vulgaris
Phvul.002G041000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3903279-3908278 Phaseolus vulgaris
Phvul.002G041000 5.0kb downstream 5.0kb downstream 9851 true Chr02: 3893428-3903278 Phaseolus vulgaris
Phvul.002G041000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3893428-3898427 Phaseolus vulgaris
Phvul.002G041000 10.0kb upstream 10.0kb upstream 14851 true Chr02: 3898428-3913278 Phaseolus vulgaris
Phvul.002G041000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3903279-3913278 Phaseolus vulgaris
Phvul.002G041000 10.0kb downstream 10.0kb downstream 14851 true Chr02: 3888428-3903278 Phaseolus vulgaris
Phvul.002G041000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3888428-3898427 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041014 5273 Angiosperm View MSA
122308976 5265 Fabidae View MSA
124065575 5270 Rosid View MSA
123737845 5271 Pentapetalae View MSA
122786817 5272 Eudicot View MSA
121347889 5274 Embryophyte View MSA
123380667 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.1642 0.0 50.2823    
cufflinks 16.5821 0.0 43.8987    
cufflinks 12.3934 0.0 33.5636    
cufflinks 20.8075 0.0 54.603   High
cufflinks 13.3402 0.0 36.1474    
cufflinks 8.46466 0.0 23.6764   Low
cufflinks 13.4883 0.0 36.202    
cufflinks 14.7983 0.0 39.3196    
cufflinks 10.9533 0.0 29.9743   Low
cufflinks 19.723 0.0 51.7271    
cufflinks 20.5641 0.0 53.9016   High

0 Strain