Gene : Phvul.002G044500 P. vulgaris v2.1
Defline:  (1 of 79) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  446
Name:  ? Phvul.002G044500 Secondary Identifier:  ? PAC:37176369
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G044500 0.5kb upstream 0.5kb upstream 2834 true Chr02: 4164681-4167514 Phaseolus vulgaris
Phvul.002G044500 0.5kb upstream 0.5kb upstream 500 false Chr02: 4167015-4167514 Phaseolus vulgaris
Phvul.002G044500 0.5kb downstream 0.5kb downstream 2834 true Chr02: 4164181-4167014 Phaseolus vulgaris
Phvul.002G044500 0.5kb downstream 0.5kb downstream 500 false Chr02: 4164181-4164680 Phaseolus vulgaris
Phvul.002G044500 1.0kb upstream 1.0kb upstream 3334 true Chr02: 4164681-4168014 Phaseolus vulgaris
Phvul.002G044500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4167015-4168014 Phaseolus vulgaris
Phvul.002G044500 1.0kb downstream 1.0kb downstream 3334 true Chr02: 4163681-4167014 Phaseolus vulgaris
Phvul.002G044500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4163681-4164680 Phaseolus vulgaris
Phvul.002G044500 2.0kb upstream 2.0kb upstream 4334 true Chr02: 4164681-4169014 Phaseolus vulgaris
Phvul.002G044500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4167015-4169014 Phaseolus vulgaris
Phvul.002G044500 2.0kb downstream 2.0kb downstream 4334 true Chr02: 4162681-4167014 Phaseolus vulgaris
Phvul.002G044500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4162681-4164680 Phaseolus vulgaris
Phvul.002G044500 5.0kb upstream 5.0kb upstream 7334 true Chr02: 4164681-4172014 Phaseolus vulgaris
Phvul.002G044500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4167015-4172014 Phaseolus vulgaris
Phvul.002G044500 5.0kb downstream 5.0kb downstream 7334 true Chr02: 4159681-4167014 Phaseolus vulgaris
Phvul.002G044500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4159681-4164680 Phaseolus vulgaris
Phvul.002G044500 10.0kb upstream 10.0kb upstream 12334 true Chr02: 4164681-4177014 Phaseolus vulgaris
Phvul.002G044500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4167015-4177014 Phaseolus vulgaris
Phvul.002G044500 10.0kb downstream 10.0kb downstream 12334 true Chr02: 4154681-4167014 Phaseolus vulgaris
Phvul.002G044500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4154681-4164680 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300254 5265 Fabidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.11619 0.0 3.67123    
cufflinks 1.39934 0.0 4.49121   High
cufflinks 0.585307 0.0 2.0667    
cufflinks 0.639815 0.0 2.25677    
cufflinks 0.630868 0.0 2.22094    
cufflinks 1.18643 0.0 3.87727   High
cufflinks 0.415768 0.0 1.5192 Low Low
cufflinks 0.887806 0.0 2.99313    
cufflinks 0.409521 0.0 1.50256 Low Low
cufflinks 1.03127 0.0 3.42504    
cufflinks 0.525139 0.0 1.88256 Low  

0 Strain