Gene : Phvul.002G045200 P. vulgaris v2.1
Defline:  (1 of 3) PTHR10314//PTHR10314:SF101 - SER/THR DEHYDRATASE, TRP SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  453
Name:  ? Phvul.002G045200 Secondary Identifier:  ? PAC:37176878
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CYSTSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6936 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G045200 0.5kb upstream 0.5kb upstream 6631 true Chr02: 4196019-4202649 Phaseolus vulgaris
Phvul.002G045200 0.5kb upstream 0.5kb upstream 500 false Chr02: 4202150-4202649 Phaseolus vulgaris
Phvul.002G045200 0.5kb downstream 0.5kb downstream 6631 true Chr02: 4195519-4202149 Phaseolus vulgaris
Phvul.002G045200 0.5kb downstream 0.5kb downstream 500 false Chr02: 4195519-4196018 Phaseolus vulgaris
Phvul.002G045200 1.0kb upstream 1.0kb upstream 7131 true Chr02: 4196019-4203149 Phaseolus vulgaris
Phvul.002G045200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4202150-4203149 Phaseolus vulgaris
Phvul.002G045200 1.0kb downstream 1.0kb downstream 7131 true Chr02: 4195019-4202149 Phaseolus vulgaris
Phvul.002G045200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4195019-4196018 Phaseolus vulgaris
Phvul.002G045200 2.0kb upstream 2.0kb upstream 8131 true Chr02: 4196019-4204149 Phaseolus vulgaris
Phvul.002G045200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4202150-4204149 Phaseolus vulgaris
Phvul.002G045200 2.0kb downstream 2.0kb downstream 8131 true Chr02: 4194019-4202149 Phaseolus vulgaris
Phvul.002G045200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4194019-4196018 Phaseolus vulgaris
Phvul.002G045200 5.0kb upstream 5.0kb upstream 11131 true Chr02: 4196019-4207149 Phaseolus vulgaris
Phvul.002G045200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4202150-4207149 Phaseolus vulgaris
Phvul.002G045200 5.0kb downstream 5.0kb downstream 11131 true Chr02: 4191019-4202149 Phaseolus vulgaris
Phvul.002G045200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4191019-4196018 Phaseolus vulgaris
Phvul.002G045200 10.0kb upstream 10.0kb upstream 16131 true Chr02: 4196019-4212149 Phaseolus vulgaris
Phvul.002G045200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4202150-4212149 Phaseolus vulgaris
Phvul.002G045200 10.0kb downstream 10.0kb downstream 16131 true Chr02: 4186019-4202149 Phaseolus vulgaris
Phvul.002G045200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4186019-4196018 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312558 5265 Fabidae View MSA
124073485 5270 Rosid View MSA
123750353 5271 Pentapetalae View MSA
122787082 5272 Eudicot View MSA
122044204 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.8377 0.0 243.935 High  
cufflinks 63.0477 0.0 166.336 High  
cufflinks 40.9114 0.0 106.038 High Low
cufflinks 116.589 0.0 322.831 High High
cufflinks 51.6866 0.0 134.707 High  
cufflinks 38.7665 0.0 100.359 High Low
cufflinks 58.4976 0.0 153.766 High  
cufflinks 70.5391 0.0 187.887 High  
cufflinks 104.694 0.0 288.391 High High
cufflinks 77.3922 0.0 207.095 High  
cufflinks 60.9934 0.0 160.343 High  

0 Strain