Gene : Phvul.002G022500 P. vulgaris v2.1
Defline:  (1 of 1) K14307 - nucleoporin p58/p45 (NUPL1, NUP49) Genomic Order:  223
Name:  ? Phvul.002G022500 Secondary Identifier:  ? PAC:37174714
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G022500 0.5kb upstream 0.5kb upstream 5397 true Chr02: 2396668-2402064 Phaseolus vulgaris
Phvul.002G022500 0.5kb upstream 0.5kb upstream 500 false Chr02: 2401565-2402064 Phaseolus vulgaris
Phvul.002G022500 0.5kb downstream 0.5kb downstream 5397 true Chr02: 2396168-2401564 Phaseolus vulgaris
Phvul.002G022500 0.5kb downstream 0.5kb downstream 500 false Chr02: 2396168-2396667 Phaseolus vulgaris
Phvul.002G022500 1.0kb upstream 1.0kb upstream 5897 true Chr02: 2396668-2402564 Phaseolus vulgaris
Phvul.002G022500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2401565-2402564 Phaseolus vulgaris
Phvul.002G022500 1.0kb downstream 1.0kb downstream 5897 true Chr02: 2395668-2401564 Phaseolus vulgaris
Phvul.002G022500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2395668-2396667 Phaseolus vulgaris
Phvul.002G022500 2.0kb upstream 2.0kb upstream 6897 true Chr02: 2396668-2403564 Phaseolus vulgaris
Phvul.002G022500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2401565-2403564 Phaseolus vulgaris
Phvul.002G022500 2.0kb downstream 2.0kb downstream 6897 true Chr02: 2394668-2401564 Phaseolus vulgaris
Phvul.002G022500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2394668-2396667 Phaseolus vulgaris
Phvul.002G022500 5.0kb upstream 5.0kb upstream 9897 true Chr02: 2396668-2406564 Phaseolus vulgaris
Phvul.002G022500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2401565-2406564 Phaseolus vulgaris
Phvul.002G022500 5.0kb downstream 5.0kb downstream 9897 true Chr02: 2391668-2401564 Phaseolus vulgaris
Phvul.002G022500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2391668-2396667 Phaseolus vulgaris
Phvul.002G022500 10.0kb upstream 10.0kb upstream 14897 true Chr02: 2396668-2411564 Phaseolus vulgaris
Phvul.002G022500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2401565-2411564 Phaseolus vulgaris
Phvul.002G022500 10.0kb downstream 10.0kb downstream 14897 true Chr02: 2386668-2401564 Phaseolus vulgaris
Phvul.002G022500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2386668-2396667 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301960 5265 Fabidae View MSA
124074755 5270 Rosid View MSA
123740540 5271 Pentapetalae View MSA
122789267 5272 Eudicot View MSA
122043040 5273 Angiosperm View MSA
121344391 5274 Embryophyte View MSA
123428093 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.73727 0.0 24.8634   Low
cufflinks 16.6422 0.0 53.9397   High
cufflinks 6.79665 0.0 21.2869   Low
cufflinks 10.9679 0.0 36.706    
cufflinks 11.5208 0.0 33.7067    
cufflinks 10.3286 0.0 35.6107    
cufflinks 11.0205 0.0 37.6711    
cufflinks 11.0222 0.0 37.0295    
cufflinks 12.2097 0.0 40.7062    
cufflinks 13.1578 0.0 37.8221    
cufflinks 12.4331 0.0 41.8778    

0 Strain