Gene : Phvul.002G029500 P. vulgaris v2.1
Defline:  (1 of 1) K19001 - ATP-dependent DNA helicase (HELLS, DDM1) Genomic Order:  293
Name:  ? Phvul.002G029500 Secondary Identifier:  ? PAC:37176720
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G029500 0.5kb upstream 0.5kb upstream 6513 true Chr02: 3017538-3024050 Phaseolus vulgaris
Phvul.002G029500 0.5kb upstream 0.5kb upstream 500 false Chr02: 3017538-3018037 Phaseolus vulgaris
Phvul.002G029500 0.5kb downstream 0.5kb downstream 6513 true Chr02: 3018038-3024550 Phaseolus vulgaris
Phvul.002G029500 0.5kb downstream 0.5kb downstream 500 false Chr02: 3024051-3024550 Phaseolus vulgaris
Phvul.002G029500 1.0kb upstream 1.0kb upstream 7013 true Chr02: 3017038-3024050 Phaseolus vulgaris
Phvul.002G029500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3017038-3018037 Phaseolus vulgaris
Phvul.002G029500 1.0kb downstream 1.0kb downstream 7013 true Chr02: 3018038-3025050 Phaseolus vulgaris
Phvul.002G029500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3024051-3025050 Phaseolus vulgaris
Phvul.002G029500 2.0kb upstream 2.0kb upstream 8013 true Chr02: 3016038-3024050 Phaseolus vulgaris
Phvul.002G029500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3016038-3018037 Phaseolus vulgaris
Phvul.002G029500 2.0kb downstream 2.0kb downstream 8013 true Chr02: 3018038-3026050 Phaseolus vulgaris
Phvul.002G029500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3024051-3026050 Phaseolus vulgaris
Phvul.002G029500 5.0kb upstream 5.0kb upstream 11013 true Chr02: 3013038-3024050 Phaseolus vulgaris
Phvul.002G029500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3013038-3018037 Phaseolus vulgaris
Phvul.002G029500 5.0kb downstream 5.0kb downstream 11013 true Chr02: 3018038-3029050 Phaseolus vulgaris
Phvul.002G029500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3024051-3029050 Phaseolus vulgaris
Phvul.002G029500 10.0kb upstream 10.0kb upstream 16013 true Chr02: 3008038-3024050 Phaseolus vulgaris
Phvul.002G029500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3008038-3018037 Phaseolus vulgaris
Phvul.002G029500 10.0kb downstream 10.0kb downstream 16013 true Chr02: 3018038-3034050 Phaseolus vulgaris
Phvul.002G029500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3024051-3034050 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306221 5265 Fabidae View MSA
124067846 5270 Rosid View MSA
123741401 5271 Pentapetalae View MSA
122792521 5272 Eudicot View MSA
122043835 5273 Angiosperm View MSA
121346038 5274 Embryophyte View MSA
123424281 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.88245 0.0 5.63984    
cufflinks 6.53414 0.0 17.4181    
cufflinks 2.29726 0.0 6.73316    
cufflinks 1.68974 0.0 5.19796    
cufflinks 3.81071 0.0 10.71    
cufflinks 4.82341 0.0 13.1599    
cufflinks 6.58116 0.0 17.4987    
cufflinks 7.00284 0.0 18.5116    
cufflinks 6.56536 0.0 17.4871    
cufflinks 0.204531 0.0 0.775465 Low Low
cufflinks 3.66849 0.0 10.3119    

0 Strain