Gene : Phvul.002G029800 P. vulgaris v2.1
Defline:  (1 of 2) K00234 - succinate dehydrogenase (ubiquinone) flavoprotein subunit (SDHA, SDH1) Genomic Order:  296
Name:  ? Phvul.002G029800 Secondary Identifier:  ? PAC:37177174
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3781 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4302 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7279 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G029800 0.5kb upstream 0.5kb upstream 7073 true Chr02: 3061472-3068544 Phaseolus vulgaris
Phvul.002G029800 0.5kb upstream 0.5kb upstream 500 false Chr02: 3061472-3061971 Phaseolus vulgaris
Phvul.002G029800 0.5kb downstream 0.5kb downstream 7073 true Chr02: 3061972-3069044 Phaseolus vulgaris
Phvul.002G029800 0.5kb downstream 0.5kb downstream 500 false Chr02: 3068545-3069044 Phaseolus vulgaris
Phvul.002G029800 1.0kb upstream 1.0kb upstream 7573 true Chr02: 3060972-3068544 Phaseolus vulgaris
Phvul.002G029800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3060972-3061971 Phaseolus vulgaris
Phvul.002G029800 1.0kb downstream 1.0kb downstream 7573 true Chr02: 3061972-3069544 Phaseolus vulgaris
Phvul.002G029800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3068545-3069544 Phaseolus vulgaris
Phvul.002G029800 2.0kb upstream 2.0kb upstream 8573 true Chr02: 3059972-3068544 Phaseolus vulgaris
Phvul.002G029800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3059972-3061971 Phaseolus vulgaris
Phvul.002G029800 2.0kb downstream 2.0kb downstream 8573 true Chr02: 3061972-3070544 Phaseolus vulgaris
Phvul.002G029800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3068545-3070544 Phaseolus vulgaris
Phvul.002G029800 5.0kb upstream 5.0kb upstream 11573 true Chr02: 3056972-3068544 Phaseolus vulgaris
Phvul.002G029800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3056972-3061971 Phaseolus vulgaris
Phvul.002G029800 5.0kb downstream 5.0kb downstream 11573 true Chr02: 3061972-3073544 Phaseolus vulgaris
Phvul.002G029800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3068545-3073544 Phaseolus vulgaris
Phvul.002G029800 10.0kb upstream 10.0kb upstream 16573 true Chr02: 3051972-3068544 Phaseolus vulgaris
Phvul.002G029800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3051972-3061971 Phaseolus vulgaris
Phvul.002G029800 10.0kb downstream 10.0kb downstream 16573 true Chr02: 3061972-3078544 Phaseolus vulgaris
Phvul.002G029800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3068545-3078544 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310620 5265 Fabidae View MSA
124063356 5270 Rosid View MSA
123753034 5271 Pentapetalae View MSA
122790960 5272 Eudicot View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 73.6675 0.0 210.377 High  
cufflinks 50.5478 0.0 138.428 High Low
cufflinks 54.6838 0.0 151.001 High  
cufflinks 103.044 0.0 304.127 High High
cufflinks 53.4063 0.0 146.69 High  
cufflinks 49.0929 0.0 134.007 High Low
cufflinks 66.3825 0.0 187.26 High  
cufflinks 62.5559 0.0 175.72 High  
cufflinks 79.353 0.0 228.4 High  
cufflinks 58.4402 0.0 162.346 High  
cufflinks 71.835 0.0 203.848 High  

0 Strain