Gene : Phvul.002G017500 P. vulgaris v2.1
Defline:  (1 of 6) K00588 - caffeoyl-CoA O-methyltransferase (E2.1.1.104) Genomic Order:  173
Name:  ? Phvul.002G017500 Secondary Identifier:  ? PAC:37176249
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1121 Phaseolus vulgaris pathologic  
Pvulgaris PWY-361 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G017500 0.5kb upstream 0.5kb upstream 2265 true Chr02: 1876796-1879060 Phaseolus vulgaris
Phvul.002G017500 0.5kb upstream 0.5kb upstream 500 false Chr02: 1878561-1879060 Phaseolus vulgaris
Phvul.002G017500 0.5kb downstream 0.5kb downstream 2265 true Chr02: 1876296-1878560 Phaseolus vulgaris
Phvul.002G017500 0.5kb downstream 0.5kb downstream 500 false Chr02: 1876296-1876795 Phaseolus vulgaris
Phvul.002G017500 1.0kb upstream 1.0kb upstream 2765 true Chr02: 1876796-1879560 Phaseolus vulgaris
Phvul.002G017500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 1878561-1879560 Phaseolus vulgaris
Phvul.002G017500 1.0kb downstream 1.0kb downstream 2765 true Chr02: 1875796-1878560 Phaseolus vulgaris
Phvul.002G017500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 1875796-1876795 Phaseolus vulgaris
Phvul.002G017500 2.0kb upstream 2.0kb upstream 3765 true Chr02: 1876796-1880560 Phaseolus vulgaris
Phvul.002G017500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 1878561-1880560 Phaseolus vulgaris
Phvul.002G017500 2.0kb downstream 2.0kb downstream 3765 true Chr02: 1874796-1878560 Phaseolus vulgaris
Phvul.002G017500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 1874796-1876795 Phaseolus vulgaris
Phvul.002G017500 5.0kb upstream 5.0kb upstream 6765 true Chr02: 1876796-1883560 Phaseolus vulgaris
Phvul.002G017500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 1878561-1883560 Phaseolus vulgaris
Phvul.002G017500 5.0kb downstream 5.0kb downstream 6765 true Chr02: 1871796-1878560 Phaseolus vulgaris
Phvul.002G017500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 1871796-1876795 Phaseolus vulgaris
Phvul.002G017500 10.0kb upstream 10.0kb upstream 11765 true Chr02: 1876796-1888560 Phaseolus vulgaris
Phvul.002G017500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 1878561-1888560 Phaseolus vulgaris
Phvul.002G017500 10.0kb downstream 10.0kb downstream 11765 true Chr02: 1866796-1878560 Phaseolus vulgaris
Phvul.002G017500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 1866796-1876795 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298243 5265 Fabidae View MSA
124036377 5270 Rosid View MSA
123609732 5271 Pentapetalae View MSA
122644374 5272 Eudicot View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.3295 0.0 73.8114    
cufflinks 9.69287 0.0 27.4887    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.84013 0.0 6.28536    
cufflinks 3.64284 0.0 11.5749    
cufflinks 0.0418528 0.0 0.201794 Low Low
cufflinks 40.3343 0.0 104.294 High High
cufflinks 47.4489 0.0 122.667 High High
cufflinks 9.18747 0.0 26.184    
cufflinks 0.553532 0.0 2.11852    
cufflinks 2.78991 0.0 9.1214    

0 Strain