Gene : Phvul.002G003400 P. vulgaris v2.1
Defline:  (1 of 3) K02267 - cytochrome c oxidase subunit 6b (COX6B) Genomic Order:  32
Name:  ? Phvul.002G003400 Secondary Identifier:  ? PAC:37177626
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3781 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7279 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G003400 0.5kb upstream 0.5kb upstream 2423 true Chr02: 460013-462435 Phaseolus vulgaris
Phvul.002G003400 0.5kb upstream 0.5kb upstream 500 false Chr02: 461936-462435 Phaseolus vulgaris
Phvul.002G003400 0.5kb downstream 0.5kb downstream 2423 true Chr02: 459513-461935 Phaseolus vulgaris
Phvul.002G003400 0.5kb downstream 0.5kb downstream 500 false Chr02: 459513-460012 Phaseolus vulgaris
Phvul.002G003400 1.0kb upstream 1.0kb upstream 2923 true Chr02: 460013-462935 Phaseolus vulgaris
Phvul.002G003400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 461936-462935 Phaseolus vulgaris
Phvul.002G003400 1.0kb downstream 1.0kb downstream 2923 true Chr02: 459013-461935 Phaseolus vulgaris
Phvul.002G003400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 459013-460012 Phaseolus vulgaris
Phvul.002G003400 2.0kb upstream 2.0kb upstream 3923 true Chr02: 460013-463935 Phaseolus vulgaris
Phvul.002G003400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 461936-463935 Phaseolus vulgaris
Phvul.002G003400 2.0kb downstream 2.0kb downstream 3923 true Chr02: 458013-461935 Phaseolus vulgaris
Phvul.002G003400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 458013-460012 Phaseolus vulgaris
Phvul.002G003400 5.0kb upstream 5.0kb upstream 6923 true Chr02: 460013-466935 Phaseolus vulgaris
Phvul.002G003400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 461936-466935 Phaseolus vulgaris
Phvul.002G003400 5.0kb downstream 5.0kb downstream 6923 true Chr02: 455013-461935 Phaseolus vulgaris
Phvul.002G003400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 455013-460012 Phaseolus vulgaris
Phvul.002G003400 10.0kb upstream 10.0kb upstream 11923 true Chr02: 460013-471935 Phaseolus vulgaris
Phvul.002G003400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 461936-471935 Phaseolus vulgaris
Phvul.002G003400 10.0kb downstream 10.0kb downstream 11923 true Chr02: 450013-461935 Phaseolus vulgaris
Phvul.002G003400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 450013-460012 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304521 5265 Fabidae View MSA
124072730 5270 Rosid View MSA
123743678 5271 Pentapetalae View MSA
122770737 5272 Eudicot View MSA
122050829 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.212928 0.0 0.922478 Low  
cufflinks 0.575499 0.0 2.24613   High
cufflinks 0.0924325 0.0 0.456852 Low Low
cufflinks 0.196168 0.0 0.854319 Low  
cufflinks 0.0953374 0.0 0.46784 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.438263 0.0 1.75476 Low High
cufflinks 0.274663 0.0 1.13089 Low  
cufflinks 0.100315 0.0 0.462925 Low Low
cufflinks 0.143723 0.0 0.650823 Low  
cufflinks 0.272722 0.0 1.14651 Low  

0 Strain