Gene : Phvul.002G001900 P. vulgaris v2.1
Defline:  (1 of 1) K10848 - DNA excision repair protein ERCC-4 (ERCC4, XPF) Genomic Order:  18
Name:  ? Phvul.002G001900 Secondary Identifier:  ? PAC:37177284
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G001900 0.5kb upstream 0.5kb upstream 6297 true Chr02: 166530-172826 Phaseolus vulgaris
Phvul.002G001900 0.5kb upstream 0.5kb upstream 500 false Chr02: 172327-172826 Phaseolus vulgaris
Phvul.002G001900 0.5kb downstream 0.5kb downstream 6297 true Chr02: 166030-172326 Phaseolus vulgaris
Phvul.002G001900 0.5kb downstream 0.5kb downstream 500 false Chr02: 166030-166529 Phaseolus vulgaris
Phvul.002G001900 1.0kb upstream 1.0kb upstream 6797 true Chr02: 166530-173326 Phaseolus vulgaris
Phvul.002G001900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 172327-173326 Phaseolus vulgaris
Phvul.002G001900 1.0kb downstream 1.0kb downstream 6797 true Chr02: 165530-172326 Phaseolus vulgaris
Phvul.002G001900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 165530-166529 Phaseolus vulgaris
Phvul.002G001900 2.0kb upstream 2.0kb upstream 7797 true Chr02: 166530-174326 Phaseolus vulgaris
Phvul.002G001900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 172327-174326 Phaseolus vulgaris
Phvul.002G001900 2.0kb downstream 2.0kb downstream 7797 true Chr02: 164530-172326 Phaseolus vulgaris
Phvul.002G001900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 164530-166529 Phaseolus vulgaris
Phvul.002G001900 5.0kb upstream 5.0kb upstream 10797 true Chr02: 166530-177326 Phaseolus vulgaris
Phvul.002G001900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 172327-177326 Phaseolus vulgaris
Phvul.002G001900 5.0kb downstream 5.0kb downstream 10797 true Chr02: 161530-172326 Phaseolus vulgaris
Phvul.002G001900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 161530-166529 Phaseolus vulgaris
Phvul.002G001900 10.0kb upstream 10.0kb upstream 15797 true Chr02: 166530-182326 Phaseolus vulgaris
Phvul.002G001900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 172327-182326 Phaseolus vulgaris
Phvul.002G001900 10.0kb downstream 10.0kb downstream 15797 true Chr02: 156530-172326 Phaseolus vulgaris
Phvul.002G001900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 156530-166529 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026556 5273 Angiosperm View MSA
122312538 5265 Fabidae View MSA
124065772 5270 Rosid View MSA
123749861 5271 Pentapetalae View MSA
122792541 5272 Eudicot View MSA
121346199 5274 Embryophyte View MSA
123424869 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.77809 0.0 10.164   Low
cufflinks 3.70648 0.0 19.6367    
cufflinks 4.23906 0.0 15.2494    
cufflinks 1.6914 0.0 6.65056   Low
cufflinks 3.02988 0.0 14.9833    
cufflinks 5.91884 0.0 27.9672   High
cufflinks 4.86866 0.0 23.6593    
cufflinks 5.3644 0.0 22.1486   High
cufflinks 3.14541 0.0 17.1332    
cufflinks 4.35814 0.0 22.3845    
cufflinks 3.45305 0.0 16.8536    

0 Strain