Gene : Phvul.001G259000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10836:SF59 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC1, CYTOSOLIC Genomic Order:  2571
Name:  ? Phvul.001G259000 Secondary Identifier:  ? PAC:37170442
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris ANAGLYCOLYSIS-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-1042 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris SUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G259000 0.5kb upstream 0.5kb upstream 3520 true Chr01: 50743095-50746614 Phaseolus vulgaris
Phvul.001G259000 0.5kb upstream 0.5kb upstream 500 false Chr01: 50743095-50743594 Phaseolus vulgaris
Phvul.001G259000 0.5kb downstream 0.5kb downstream 3520 true Chr01: 50743595-50747114 Phaseolus vulgaris
Phvul.001G259000 0.5kb downstream 0.5kb downstream 500 false Chr01: 50746615-50747114 Phaseolus vulgaris
Phvul.001G259000 1.0kb upstream 1.0kb upstream 4020 true Chr01: 50742595-50746614 Phaseolus vulgaris
Phvul.001G259000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50742595-50743594 Phaseolus vulgaris
Phvul.001G259000 1.0kb downstream 1.0kb downstream 4020 true Chr01: 50743595-50747614 Phaseolus vulgaris
Phvul.001G259000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50746615-50747614 Phaseolus vulgaris
Phvul.001G259000 2.0kb upstream 2.0kb upstream 5020 true Chr01: 50741595-50746614 Phaseolus vulgaris
Phvul.001G259000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50741595-50743594 Phaseolus vulgaris
Phvul.001G259000 2.0kb downstream 2.0kb downstream 5020 true Chr01: 50743595-50748614 Phaseolus vulgaris
Phvul.001G259000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50746615-50748614 Phaseolus vulgaris
Phvul.001G259000 5.0kb upstream 5.0kb upstream 8020 true Chr01: 50738595-50746614 Phaseolus vulgaris
Phvul.001G259000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50738595-50743594 Phaseolus vulgaris
Phvul.001G259000 5.0kb downstream 5.0kb downstream 8020 true Chr01: 50743595-50751614 Phaseolus vulgaris
Phvul.001G259000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50746615-50751614 Phaseolus vulgaris
Phvul.001G259000 10.0kb upstream 10.0kb upstream 13020 true Chr01: 50733595-50746614 Phaseolus vulgaris
Phvul.001G259000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50733595-50743594 Phaseolus vulgaris
Phvul.001G259000 10.0kb downstream 10.0kb downstream 13020 true Chr01: 50743595-50756614 Phaseolus vulgaris
Phvul.001G259000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50746615-50756614 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314378 5265 Fabidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.3606 0.0 35.383    
cufflinks 20.1898 0.0 52.4193    
cufflinks 0.519959 0.0 1.91762 Low Low
cufflinks 16.4548 0.0 43.1588    
cufflinks 6.52436 0.0 18.4066    
cufflinks 22.0908 0.0 57.2324    
cufflinks 136.935 0.0 395.573 High High
cufflinks 85.1929 0.0 233.148 High  
cufflinks 364.11 0.0 1243.69 High High
cufflinks 24.4212 0.0 63.1833    
cufflinks 48.6534 0.0 127.394 High  

0 Strain