Gene : Phvul.001G260500 P. vulgaris v2.1
Defline:  (1 of 1) K14308 - nuclear pore complex protein Nup54 (NUP54, NUP57) Genomic Order:  2586
Name:  ? Phvul.001G260500 Secondary Identifier:  ? PAC:37170636
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G260500 0.5kb upstream 0.5kb upstream 3940 true Chr01: 50850386-50854325 Phaseolus vulgaris
Phvul.001G260500 0.5kb upstream 0.5kb upstream 500 false Chr01: 50853826-50854325 Phaseolus vulgaris
Phvul.001G260500 0.5kb downstream 0.5kb downstream 3940 true Chr01: 50849886-50853825 Phaseolus vulgaris
Phvul.001G260500 0.5kb downstream 0.5kb downstream 500 false Chr01: 50849886-50850385 Phaseolus vulgaris
Phvul.001G260500 1.0kb upstream 1.0kb upstream 4440 true Chr01: 50850386-50854825 Phaseolus vulgaris
Phvul.001G260500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50853826-50854825 Phaseolus vulgaris
Phvul.001G260500 1.0kb downstream 1.0kb downstream 4440 true Chr01: 50849386-50853825 Phaseolus vulgaris
Phvul.001G260500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50849386-50850385 Phaseolus vulgaris
Phvul.001G260500 2.0kb upstream 2.0kb upstream 5440 true Chr01: 50850386-50855825 Phaseolus vulgaris
Phvul.001G260500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50853826-50855825 Phaseolus vulgaris
Phvul.001G260500 2.0kb downstream 2.0kb downstream 5440 true Chr01: 50848386-50853825 Phaseolus vulgaris
Phvul.001G260500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50848386-50850385 Phaseolus vulgaris
Phvul.001G260500 5.0kb upstream 5.0kb upstream 8440 true Chr01: 50850386-50858825 Phaseolus vulgaris
Phvul.001G260500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50853826-50858825 Phaseolus vulgaris
Phvul.001G260500 5.0kb downstream 5.0kb downstream 8440 true Chr01: 50845386-50853825 Phaseolus vulgaris
Phvul.001G260500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50845386-50850385 Phaseolus vulgaris
Phvul.001G260500 10.0kb upstream 10.0kb upstream 13440 true Chr01: 50850386-50863825 Phaseolus vulgaris
Phvul.001G260500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50853826-50863825 Phaseolus vulgaris
Phvul.001G260500 10.0kb downstream 10.0kb downstream 13440 true Chr01: 50840386-50853825 Phaseolus vulgaris
Phvul.001G260500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50840386-50850385 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301153 5265 Fabidae View MSA
124068868 5270 Rosid View MSA
123740833 5271 Pentapetalae View MSA
122795867 5272 Eudicot View MSA
122045094 5273 Angiosperm View MSA
121347023 5274 Embryophyte View MSA
123424455 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.81146 0.0 16.5756    
cufflinks 9.32488 0.0 25.5295   High
cufflinks 4.2048 0.0 12.4408   Low
cufflinks 5.50894 0.0 15.8221    
cufflinks 7.64252 0.0 21.3575    
cufflinks 6.64846 0.0 18.7551    
cufflinks 7.88552 0.0 21.8373    
cufflinks 9.03678 0.0 24.7376   High
cufflinks 6.74955 0.0 18.9755    
cufflinks 4.70783 0.0 13.7887   Low
cufflinks 8.69204 0.0 23.999    

0 Strain