Gene : Phvul.001G261800 P. vulgaris v2.1
Defline:  (1 of 4) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  2599
Name:  ? Phvul.001G261800 Secondary Identifier:  ? PAC:37169889
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G261800 0.5kb upstream 0.5kb upstream 2713 true Chr01: 50915936-50918648 Phaseolus vulgaris
Phvul.001G261800 0.5kb upstream 0.5kb upstream 500 false Chr01: 50915936-50916435 Phaseolus vulgaris
Phvul.001G261800 0.5kb downstream 0.5kb downstream 2713 true Chr01: 50916436-50919148 Phaseolus vulgaris
Phvul.001G261800 0.5kb downstream 0.5kb downstream 500 false Chr01: 50918649-50919148 Phaseolus vulgaris
Phvul.001G261800 1.0kb upstream 1.0kb upstream 3213 true Chr01: 50915436-50918648 Phaseolus vulgaris
Phvul.001G261800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50915436-50916435 Phaseolus vulgaris
Phvul.001G261800 1.0kb downstream 1.0kb downstream 3213 true Chr01: 50916436-50919648 Phaseolus vulgaris
Phvul.001G261800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50918649-50919648 Phaseolus vulgaris
Phvul.001G261800 2.0kb upstream 2.0kb upstream 4213 true Chr01: 50914436-50918648 Phaseolus vulgaris
Phvul.001G261800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50914436-50916435 Phaseolus vulgaris
Phvul.001G261800 2.0kb downstream 2.0kb downstream 4213 true Chr01: 50916436-50920648 Phaseolus vulgaris
Phvul.001G261800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50918649-50920648 Phaseolus vulgaris
Phvul.001G261800 5.0kb upstream 5.0kb upstream 7213 true Chr01: 50911436-50918648 Phaseolus vulgaris
Phvul.001G261800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50911436-50916435 Phaseolus vulgaris
Phvul.001G261800 5.0kb downstream 5.0kb downstream 7213 true Chr01: 50916436-50923648 Phaseolus vulgaris
Phvul.001G261800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50918649-50923648 Phaseolus vulgaris
Phvul.001G261800 10.0kb upstream 10.0kb upstream 12213 true Chr01: 50906436-50918648 Phaseolus vulgaris
Phvul.001G261800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50906436-50916435 Phaseolus vulgaris
Phvul.001G261800 10.0kb downstream 10.0kb downstream 12213 true Chr01: 50916436-50928648 Phaseolus vulgaris
Phvul.001G261800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50918649-50928648 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311567 5265 Fabidae View MSA
124068365 5270 Rosid View MSA
123736547 5271 Pentapetalae View MSA
122769867 5272 Eudicot View MSA
122050006 5273 Angiosperm View MSA
121311681 5274 Embryophyte View MSA
123348946 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 74.8414 0.0 254.747 High  
cufflinks 39.652 0.0 126.614 High  
cufflinks 51.3861 0.0 166.928 High  
cufflinks 85.1335 0.0 295.543 High High
cufflinks 36.038 0.0 114.566 High Low
cufflinks 38.2894 0.0 122.27 High Low
cufflinks 52.5232 0.0 171.196 High  
cufflinks 37.2159 0.0 118.728 High Low
cufflinks 61.7045 0.0 204.584 High  
cufflinks 98.0184 0.0 351.011 High High
cufflinks 60.9033 0.0 200.398 High  

0 Strain