Gene : Phvul.001G250100 P. vulgaris v2.1
Defline:  (1 of 1) KOG2160//KOG4224 - Armadillo/beta-catenin-like repeat-containing protein // Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting Genomic Order:  2481
Name:  ? Phvul.001G250100 Secondary Identifier:  ? PAC:37170739
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G250100 0.5kb upstream 0.5kb upstream 10998 true Chr01: 50078962-50089959 Phaseolus vulgaris
Phvul.001G250100 0.5kb upstream 0.5kb upstream 500 false Chr01: 50078962-50079461 Phaseolus vulgaris
Phvul.001G250100 0.5kb downstream 0.5kb downstream 10998 true Chr01: 50079462-50090459 Phaseolus vulgaris
Phvul.001G250100 0.5kb downstream 0.5kb downstream 500 false Chr01: 50089960-50090459 Phaseolus vulgaris
Phvul.001G250100 1.0kb upstream 1.0kb upstream 11498 true Chr01: 50078462-50089959 Phaseolus vulgaris
Phvul.001G250100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50078462-50079461 Phaseolus vulgaris
Phvul.001G250100 1.0kb downstream 1.0kb downstream 11498 true Chr01: 50079462-50090959 Phaseolus vulgaris
Phvul.001G250100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50089960-50090959 Phaseolus vulgaris
Phvul.001G250100 2.0kb upstream 2.0kb upstream 12498 true Chr01: 50077462-50089959 Phaseolus vulgaris
Phvul.001G250100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50077462-50079461 Phaseolus vulgaris
Phvul.001G250100 2.0kb downstream 2.0kb downstream 12498 true Chr01: 50079462-50091959 Phaseolus vulgaris
Phvul.001G250100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50089960-50091959 Phaseolus vulgaris
Phvul.001G250100 5.0kb upstream 5.0kb upstream 15498 true Chr01: 50074462-50089959 Phaseolus vulgaris
Phvul.001G250100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50074462-50079461 Phaseolus vulgaris
Phvul.001G250100 5.0kb downstream 5.0kb downstream 15498 true Chr01: 50079462-50094959 Phaseolus vulgaris
Phvul.001G250100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50089960-50094959 Phaseolus vulgaris
Phvul.001G250100 10.0kb upstream 10.0kb upstream 20498 true Chr01: 50069462-50089959 Phaseolus vulgaris
Phvul.001G250100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50069462-50079461 Phaseolus vulgaris
Phvul.001G250100 10.0kb downstream 10.0kb downstream 20498 true Chr01: 50079462-50099959 Phaseolus vulgaris
Phvul.001G250100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50089960-50099959 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048106 5273 Angiosperm View MSA
122311347 5265 Fabidae View MSA
124063700 5270 Rosid View MSA
123740295 5271 Pentapetalae View MSA
122787406 5272 Eudicot View MSA
121347002 5274 Embryophyte View MSA
123380478 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.22946 0.0 4.19191   Low
cufflinks 8.84713 0.0 28.5313    
cufflinks 12.6486 0.0 42.7975    
cufflinks 5.7414 0.0 18.288    
cufflinks 10.3055 0.0 33.421    
cufflinks 19.7022 0.0 72.2411    
cufflinks 16.27 0.0 56.9516    
cufflinks 18.1982 0.0 65.6873    
cufflinks 20.6454 0.0 75.9272    
cufflinks 12.0287 0.0 40.005    
cufflinks 9.28782 0.0 29.8638    

0 Strain