Gene : Phvul.001G250500 P. vulgaris v2.1
Defline:  (1 of 3) 2.6.1.78 - Aspartate--prephenate aminotransferase / Prephenate transaminase Genomic Order:  2485
Name:  ? Phvul.001G250500 Secondary Identifier:  ? PAC:37169506
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ASPARTATE-DEG1-PWY Phaseolus vulgaris pathologic  
Pvulgaris ASPARTATESYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3001 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3461 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3462 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3481 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7115 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7117 Phaseolus vulgaris pathologic  
Pvulgaris THRESYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G250500 0.5kb upstream 0.5kb upstream 4370 true Chr01: 50108468-50112837 Phaseolus vulgaris
Phvul.001G250500 0.5kb upstream 0.5kb upstream 500 false Chr01: 50108468-50108967 Phaseolus vulgaris
Phvul.001G250500 0.5kb downstream 0.5kb downstream 4370 true Chr01: 50108968-50113337 Phaseolus vulgaris
Phvul.001G250500 0.5kb downstream 0.5kb downstream 500 false Chr01: 50112838-50113337 Phaseolus vulgaris
Phvul.001G250500 1.0kb upstream 1.0kb upstream 4870 true Chr01: 50107968-50112837 Phaseolus vulgaris
Phvul.001G250500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50107968-50108967 Phaseolus vulgaris
Phvul.001G250500 1.0kb downstream 1.0kb downstream 4870 true Chr01: 50108968-50113837 Phaseolus vulgaris
Phvul.001G250500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50112838-50113837 Phaseolus vulgaris
Phvul.001G250500 2.0kb upstream 2.0kb upstream 5870 true Chr01: 50106968-50112837 Phaseolus vulgaris
Phvul.001G250500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50106968-50108967 Phaseolus vulgaris
Phvul.001G250500 2.0kb downstream 2.0kb downstream 5870 true Chr01: 50108968-50114837 Phaseolus vulgaris
Phvul.001G250500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50112838-50114837 Phaseolus vulgaris
Phvul.001G250500 5.0kb upstream 5.0kb upstream 8870 true Chr01: 50103968-50112837 Phaseolus vulgaris
Phvul.001G250500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50103968-50108967 Phaseolus vulgaris
Phvul.001G250500 5.0kb downstream 5.0kb downstream 8870 true Chr01: 50108968-50117837 Phaseolus vulgaris
Phvul.001G250500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50112838-50117837 Phaseolus vulgaris
Phvul.001G250500 10.0kb upstream 10.0kb upstream 13870 true Chr01: 50098968-50112837 Phaseolus vulgaris
Phvul.001G250500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50098968-50108967 Phaseolus vulgaris
Phvul.001G250500 10.0kb downstream 10.0kb downstream 13870 true Chr01: 50108968-50122837 Phaseolus vulgaris
Phvul.001G250500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50112838-50122837 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121783631 5273 Angiosperm View MSA
122298659 5265 Fabidae View MSA
124042148 5270 Rosid View MSA
123755311 5271 Pentapetalae View MSA
122776585 5272 Eudicot View MSA
121055079 5274 Embryophyte View MSA
123095026 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0650905 0.0 0.281738 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0302365 0.0 0.141977 Low  
cufflinks 0.0221556 0.0 0.106823 Low  
cufflinks 10.5884 0.0 28.234   High
cufflinks 3.39781 0.0 10.022    
cufflinks 20.0763 0.0 52.0013   High
cufflinks 0.00918676 0.0 0.049139 Low Low
cufflinks 0.0365926 0.0 0.168589 Low  

0 Strain