Gene : Phvul.001G252000 P. vulgaris v2.1
Defline:  (1 of 8) 1.14.11.33 - DNA oxidative demethylase / Alkylated DNA repair protein Genomic Order:  2500
Name:  ? Phvul.001G252000 Secondary Identifier:  ? PAC:37168537
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G252000 0.5kb upstream 0.5kb upstream 3867 true Chr01: 50248361-50252227 Phaseolus vulgaris
Phvul.001G252000 0.5kb upstream 0.5kb upstream 500 false Chr01: 50248361-50248860 Phaseolus vulgaris
Phvul.001G252000 0.5kb downstream 0.5kb downstream 3867 true Chr01: 50248861-50252727 Phaseolus vulgaris
Phvul.001G252000 0.5kb downstream 0.5kb downstream 500 false Chr01: 50252228-50252727 Phaseolus vulgaris
Phvul.001G252000 1.0kb upstream 1.0kb upstream 4367 true Chr01: 50247861-50252227 Phaseolus vulgaris
Phvul.001G252000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50247861-50248860 Phaseolus vulgaris
Phvul.001G252000 1.0kb downstream 1.0kb downstream 4367 true Chr01: 50248861-50253227 Phaseolus vulgaris
Phvul.001G252000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50252228-50253227 Phaseolus vulgaris
Phvul.001G252000 2.0kb upstream 2.0kb upstream 5367 true Chr01: 50246861-50252227 Phaseolus vulgaris
Phvul.001G252000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50246861-50248860 Phaseolus vulgaris
Phvul.001G252000 2.0kb downstream 2.0kb downstream 5367 true Chr01: 50248861-50254227 Phaseolus vulgaris
Phvul.001G252000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50252228-50254227 Phaseolus vulgaris
Phvul.001G252000 5.0kb upstream 5.0kb upstream 8367 true Chr01: 50243861-50252227 Phaseolus vulgaris
Phvul.001G252000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50243861-50248860 Phaseolus vulgaris
Phvul.001G252000 5.0kb downstream 5.0kb downstream 8367 true Chr01: 50248861-50257227 Phaseolus vulgaris
Phvul.001G252000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50252228-50257227 Phaseolus vulgaris
Phvul.001G252000 10.0kb upstream 10.0kb upstream 13367 true Chr01: 50238861-50252227 Phaseolus vulgaris
Phvul.001G252000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50238861-50248860 Phaseolus vulgaris
Phvul.001G252000 10.0kb downstream 10.0kb downstream 13367 true Chr01: 50248861-50262227 Phaseolus vulgaris
Phvul.001G252000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50252228-50262227 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304115 5265 Fabidae View MSA
124064048 5270 Rosid View MSA
123745943 5271 Pentapetalae View MSA
122791019 5272 Eudicot View MSA
122045269 5273 Angiosperm View MSA
121344429 5274 Embryophyte View MSA
123426064 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.13263 0.0 24.9808   Low
cufflinks 38.5812 0.0 100.13 High High
cufflinks 16.3908 0.0 42.9825    
cufflinks 17.371 0.0 45.46    
cufflinks 26.7488 0.0 69.191    
cufflinks 36.5044 0.0 94.599 High High
cufflinks 23.2808 0.0 60.2756    
cufflinks 17.0494 0.0 44.4984    
cufflinks 32.9521 0.0 85.2664 High  
cufflinks 9.59757 0.0 26.1476   Low
cufflinks 36.2856 0.0 93.968 High High

0 Strain