Gene : Phvul.001G254100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR18934:SF140 - HELICASE , IBR AND ZINC FINGER PROTEIN DOMAIN-CONTAINING PROTEIN Genomic Order:  2521
Name:  ? Phvul.001G254100 Secondary Identifier:  ? PAC:37168527
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G254100 0.5kb upstream 0.5kb upstream 7355 true Chr01: 50418588-50425942 Phaseolus vulgaris
Phvul.001G254100 0.5kb upstream 0.5kb upstream 500 false Chr01: 50418588-50419087 Phaseolus vulgaris
Phvul.001G254100 0.5kb downstream 0.5kb downstream 7355 true Chr01: 50419088-50426442 Phaseolus vulgaris
Phvul.001G254100 0.5kb downstream 0.5kb downstream 500 false Chr01: 50425943-50426442 Phaseolus vulgaris
Phvul.001G254100 1.0kb upstream 1.0kb upstream 7855 true Chr01: 50418088-50425942 Phaseolus vulgaris
Phvul.001G254100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50418088-50419087 Phaseolus vulgaris
Phvul.001G254100 1.0kb downstream 1.0kb downstream 7855 true Chr01: 50419088-50426942 Phaseolus vulgaris
Phvul.001G254100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50425943-50426942 Phaseolus vulgaris
Phvul.001G254100 2.0kb upstream 2.0kb upstream 8855 true Chr01: 50417088-50425942 Phaseolus vulgaris
Phvul.001G254100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50417088-50419087 Phaseolus vulgaris
Phvul.001G254100 2.0kb downstream 2.0kb downstream 8855 true Chr01: 50419088-50427942 Phaseolus vulgaris
Phvul.001G254100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50425943-50427942 Phaseolus vulgaris
Phvul.001G254100 5.0kb upstream 5.0kb upstream 11855 true Chr01: 50414088-50425942 Phaseolus vulgaris
Phvul.001G254100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50414088-50419087 Phaseolus vulgaris
Phvul.001G254100 5.0kb downstream 5.0kb downstream 11855 true Chr01: 50419088-50430942 Phaseolus vulgaris
Phvul.001G254100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50425943-50430942 Phaseolus vulgaris
Phvul.001G254100 10.0kb upstream 10.0kb upstream 16855 true Chr01: 50409088-50425942 Phaseolus vulgaris
Phvul.001G254100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50409088-50419087 Phaseolus vulgaris
Phvul.001G254100 10.0kb downstream 10.0kb downstream 16855 true Chr01: 50419088-50435942 Phaseolus vulgaris
Phvul.001G254100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50425943-50435942 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303749 5265 Fabidae View MSA
124065250 5270 Rosid View MSA
123737649 5271 Pentapetalae View MSA
122792677 5272 Eudicot View MSA
122041869 5273 Angiosperm View MSA
121309896 5274 Embryophyte View MSA
123347530 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.91388 0.0 5.28946   Low
cufflinks 4.53693 0.0 11.8129    
cufflinks 6.9886 0.0 18.0657    
cufflinks 1.53515 0.0 4.37017   Low
cufflinks 7.97898 0.0 20.6391    
cufflinks 8.32696 0.0 21.5676    
cufflinks 9.11861 0.0 23.6731    
cufflinks 16.1141 0.0 43.2476   High
cufflinks 7.24164 0.0 18.7198    
cufflinks 12.7848 0.0 33.649   High
cufflinks 6.30543 0.0 16.3056    

0 Strain