Gene : Phvul.001G257200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13164:SF7 - COP1-INTERACTING PROTEIN 4-RELATED Genomic Order:  2553
Name:  ? Phvul.001G257200 Secondary Identifier:  ? PAC:37169059
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G257200 0.5kb upstream 0.5kb upstream 6624 true Chr01: 50616916-50623539 Phaseolus vulgaris
Phvul.001G257200 0.5kb upstream 0.5kb upstream 500 false Chr01: 50623040-50623539 Phaseolus vulgaris
Phvul.001G257200 0.5kb downstream 0.5kb downstream 6624 true Chr01: 50616416-50623039 Phaseolus vulgaris
Phvul.001G257200 0.5kb downstream 0.5kb downstream 500 false Chr01: 50616416-50616915 Phaseolus vulgaris
Phvul.001G257200 1.0kb upstream 1.0kb upstream 7124 true Chr01: 50616916-50624039 Phaseolus vulgaris
Phvul.001G257200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50623040-50624039 Phaseolus vulgaris
Phvul.001G257200 1.0kb downstream 1.0kb downstream 7124 true Chr01: 50615916-50623039 Phaseolus vulgaris
Phvul.001G257200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50615916-50616915 Phaseolus vulgaris
Phvul.001G257200 2.0kb upstream 2.0kb upstream 8124 true Chr01: 50616916-50625039 Phaseolus vulgaris
Phvul.001G257200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50623040-50625039 Phaseolus vulgaris
Phvul.001G257200 2.0kb downstream 2.0kb downstream 8124 true Chr01: 50614916-50623039 Phaseolus vulgaris
Phvul.001G257200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50614916-50616915 Phaseolus vulgaris
Phvul.001G257200 5.0kb upstream 5.0kb upstream 11124 true Chr01: 50616916-50628039 Phaseolus vulgaris
Phvul.001G257200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50623040-50628039 Phaseolus vulgaris
Phvul.001G257200 5.0kb downstream 5.0kb downstream 11124 true Chr01: 50611916-50623039 Phaseolus vulgaris
Phvul.001G257200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50611916-50616915 Phaseolus vulgaris
Phvul.001G257200 10.0kb upstream 10.0kb upstream 16124 true Chr01: 50616916-50633039 Phaseolus vulgaris
Phvul.001G257200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50623040-50633039 Phaseolus vulgaris
Phvul.001G257200 10.0kb downstream 10.0kb downstream 16124 true Chr01: 50606916-50623039 Phaseolus vulgaris
Phvul.001G257200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50606916-50616915 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299394 5265 Fabidae View MSA
124069381 5270 Rosid View MSA
123743976 5271 Pentapetalae View MSA
122793189 5272 Eudicot View MSA
122042859 5273 Angiosperm View MSA
121310036 5274 Embryophyte View MSA
123347639 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.627797 0.0 2.05606   Low
cufflinks 1.85805 0.0 5.38621    
cufflinks 1.70412 0.0 4.96876    
cufflinks 0.793575 0.0 2.56671   Low
cufflinks 1.56716 0.0 4.6929    
cufflinks 2.06596 0.0 5.91166    
cufflinks 2.75292 0.0 7.65804    
cufflinks 3.82252 0.0 10.2854   High
cufflinks 2.59013 0.0 7.25359    
cufflinks 3.39559 0.0 9.31849   High
cufflinks 1.17152 0.0 3.60684    

0 Strain