Gene : Phvul.002G106000 P. vulgaris v2.1
Defline:  (1 of 3) PF01535//PF12854 - PPR repeat (PPR) // PPR repeat (PPR_1) Genomic Order:  1061
Name:  ? Phvul.002G106000 Secondary Identifier:  ? PAC:37175651
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G106000 0.5kb upstream 0.5kb upstream 2717 true Chr02: 22537044-22539760 Phaseolus vulgaris
Phvul.002G106000 0.5kb upstream 0.5kb upstream 500 false Chr02: 22537044-22537543 Phaseolus vulgaris
Phvul.002G106000 0.5kb downstream 0.5kb downstream 2717 true Chr02: 22537544-22540260 Phaseolus vulgaris
Phvul.002G106000 0.5kb downstream 0.5kb downstream 500 false Chr02: 22539761-22540260 Phaseolus vulgaris
Phvul.002G106000 1.0kb upstream 1.0kb upstream 3217 true Chr02: 22536544-22539760 Phaseolus vulgaris
Phvul.002G106000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 22536544-22537543 Phaseolus vulgaris
Phvul.002G106000 1.0kb downstream 1.0kb downstream 3217 true Chr02: 22537544-22540760 Phaseolus vulgaris
Phvul.002G106000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 22539761-22540760 Phaseolus vulgaris
Phvul.002G106000 2.0kb upstream 2.0kb upstream 4217 true Chr02: 22535544-22539760 Phaseolus vulgaris
Phvul.002G106000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 22535544-22537543 Phaseolus vulgaris
Phvul.002G106000 2.0kb downstream 2.0kb downstream 4217 true Chr02: 22537544-22541760 Phaseolus vulgaris
Phvul.002G106000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 22539761-22541760 Phaseolus vulgaris
Phvul.002G106000 5.0kb upstream 5.0kb upstream 7217 true Chr02: 22532544-22539760 Phaseolus vulgaris
Phvul.002G106000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 22532544-22537543 Phaseolus vulgaris
Phvul.002G106000 5.0kb downstream 5.0kb downstream 7217 true Chr02: 22537544-22544760 Phaseolus vulgaris
Phvul.002G106000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 22539761-22544760 Phaseolus vulgaris
Phvul.002G106000 10.0kb upstream 10.0kb upstream 12217 true Chr02: 22527544-22539760 Phaseolus vulgaris
Phvul.002G106000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 22527544-22537543 Phaseolus vulgaris
Phvul.002G106000 10.0kb downstream 10.0kb downstream 12217 true Chr02: 22537544-22549760 Phaseolus vulgaris
Phvul.002G106000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 22539761-22549760 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307062 5265 Fabidae View MSA
124051517 5270 Rosid View MSA
123741798 5271 Pentapetalae View MSA
122789514 5272 Eudicot View MSA
122049493 5273 Angiosperm View MSA
121311435 5274 Embryophyte View MSA
123348731 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.9395 0.0 5.9411   Low
cufflinks 4.21251 0.0 11.855   High
cufflinks 2.31066 0.0 6.93971    
cufflinks 4.07751 0.0 11.5787   High
cufflinks 3.47112 0.0 9.98018    
cufflinks 2.42226 0.0 7.23485    
cufflinks 2.31711 0.0 6.94601    
cufflinks 3.68665 0.0 10.5139    
cufflinks 3.42538 0.0 9.86129    
cufflinks 2.64577 0.0 7.8163    
cufflinks 3.51496 0.0 10.0758    

0 Strain