Gene : Phvul.002G106500 P. vulgaris v2.1
Defline:  (1 of 2) K18468 - vacuolar protein sorting-associated protein 35 (VPS35) Genomic Order:  1066
Name:  ? Phvul.002G106500 Secondary Identifier:  ? PAC:37175223
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G106500 0.5kb upstream 0.5kb upstream 11427 true Chr02: 22720323-22731749 Phaseolus vulgaris
Phvul.002G106500 0.5kb upstream 0.5kb upstream 500 false Chr02: 22720323-22720822 Phaseolus vulgaris
Phvul.002G106500 0.5kb downstream 0.5kb downstream 11427 true Chr02: 22720823-22732249 Phaseolus vulgaris
Phvul.002G106500 0.5kb downstream 0.5kb downstream 500 false Chr02: 22731750-22732249 Phaseolus vulgaris
Phvul.002G106500 1.0kb upstream 1.0kb upstream 11927 true Chr02: 22719823-22731749 Phaseolus vulgaris
Phvul.002G106500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 22719823-22720822 Phaseolus vulgaris
Phvul.002G106500 1.0kb downstream 1.0kb downstream 11927 true Chr02: 22720823-22732749 Phaseolus vulgaris
Phvul.002G106500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 22731750-22732749 Phaseolus vulgaris
Phvul.002G106500 2.0kb upstream 2.0kb upstream 12927 true Chr02: 22718823-22731749 Phaseolus vulgaris
Phvul.002G106500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 22718823-22720822 Phaseolus vulgaris
Phvul.002G106500 2.0kb downstream 2.0kb downstream 12927 true Chr02: 22720823-22733749 Phaseolus vulgaris
Phvul.002G106500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 22731750-22733749 Phaseolus vulgaris
Phvul.002G106500 5.0kb upstream 5.0kb upstream 15927 true Chr02: 22715823-22731749 Phaseolus vulgaris
Phvul.002G106500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 22715823-22720822 Phaseolus vulgaris
Phvul.002G106500 5.0kb downstream 5.0kb downstream 15927 true Chr02: 22720823-22736749 Phaseolus vulgaris
Phvul.002G106500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 22731750-22736749 Phaseolus vulgaris
Phvul.002G106500 10.0kb upstream 10.0kb upstream 20927 true Chr02: 22710823-22731749 Phaseolus vulgaris
Phvul.002G106500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 22710823-22720822 Phaseolus vulgaris
Phvul.002G106500 10.0kb downstream 10.0kb downstream 20927 true Chr02: 22720823-22741749 Phaseolus vulgaris
Phvul.002G106500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 22731750-22741749 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312645 5265 Fabidae View MSA
124070989 5270 Rosid View MSA
123744286 5271 Pentapetalae View MSA
122786661 5272 Eudicot View MSA
122044780 5273 Angiosperm View MSA
121345566 5274 Embryophyte View MSA
123426785 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.355 0.0 37.108   Low
cufflinks 16.2237 0.0 41.9494    
cufflinks 15.3356 0.0 39.6449    
cufflinks 14.983 0.0 38.7328   Low
cufflinks 15.8533 0.0 40.9777    
cufflinks 17.5752 0.0 45.488    
cufflinks 22.0505 0.0 57.407   High
cufflinks 19.9908 0.0 51.921    
cufflinks 23.7061 0.0 61.8593   High
cufflinks 23.7926 0.0 62.1217   High
cufflinks 18.7405 0.0 48.5182    

0 Strain