Gene : Phvul.002G098100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12042//PTHR12042:SF13 - LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  988
Name:  ? Phvul.002G098100 Secondary Identifier:  ? PAC:37177480
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G098100 0.5kb upstream 0.5kb upstream 4419 true Chr02: 19967124-19971542 Phaseolus vulgaris
Phvul.002G098100 0.5kb upstream 0.5kb upstream 500 false Chr02: 19971043-19971542 Phaseolus vulgaris
Phvul.002G098100 0.5kb downstream 0.5kb downstream 4419 true Chr02: 19966624-19971042 Phaseolus vulgaris
Phvul.002G098100 0.5kb downstream 0.5kb downstream 500 false Chr02: 19966624-19967123 Phaseolus vulgaris
Phvul.002G098100 1.0kb upstream 1.0kb upstream 4919 true Chr02: 19967124-19972042 Phaseolus vulgaris
Phvul.002G098100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 19971043-19972042 Phaseolus vulgaris
Phvul.002G098100 1.0kb downstream 1.0kb downstream 4919 true Chr02: 19966124-19971042 Phaseolus vulgaris
Phvul.002G098100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 19966124-19967123 Phaseolus vulgaris
Phvul.002G098100 2.0kb upstream 2.0kb upstream 5919 true Chr02: 19967124-19973042 Phaseolus vulgaris
Phvul.002G098100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 19971043-19973042 Phaseolus vulgaris
Phvul.002G098100 2.0kb downstream 2.0kb downstream 5919 true Chr02: 19965124-19971042 Phaseolus vulgaris
Phvul.002G098100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 19965124-19967123 Phaseolus vulgaris
Phvul.002G098100 5.0kb upstream 5.0kb upstream 8919 true Chr02: 19967124-19976042 Phaseolus vulgaris
Phvul.002G098100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 19971043-19976042 Phaseolus vulgaris
Phvul.002G098100 5.0kb downstream 5.0kb downstream 8919 true Chr02: 19962124-19971042 Phaseolus vulgaris
Phvul.002G098100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 19962124-19967123 Phaseolus vulgaris
Phvul.002G098100 10.0kb upstream 10.0kb upstream 13919 true Chr02: 19967124-19981042 Phaseolus vulgaris
Phvul.002G098100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 19971043-19981042 Phaseolus vulgaris
Phvul.002G098100 10.0kb downstream 10.0kb downstream 13919 true Chr02: 19957124-19971042 Phaseolus vulgaris
Phvul.002G098100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 19957124-19967123 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302894 5265 Fabidae View MSA
124070707 5270 Rosid View MSA
123741933 5271 Pentapetalae View MSA
122794617 5272 Eudicot View MSA
122048319 5273 Angiosperm View MSA
121348346 5274 Embryophyte View MSA
123380826 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.6254 0.0 21.4095   Low
cufflinks 13.6276 0.0 52.824    
cufflinks 9.91756 0.0 35.0584    
cufflinks 8.24182 0.0 29.955   Low
cufflinks 12.2003 0.0 40.8463    
cufflinks 13.8179 0.0 39.1362    
cufflinks 10.7817 0.0 36.7241    
cufflinks 14.1394 0.0 46.9827    
cufflinks 11.2609 0.0 32.6584    
cufflinks 14.7198 0.0 56.8108    
cufflinks 14.2128 0.0 40.1508    

0 Strain