Gene : Phvul.002G081500 P. vulgaris v2.1
Defline:  (1 of 3) K18211 - synaptosomal-associated protein 25 (SNAP25) Genomic Order:  820
Name:  ? Phvul.002G081500 Secondary Identifier:  ? PAC:37176537
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G081500 0.5kb upstream 0.5kb upstream 4018 true Chr02: 12749886-12753903 Phaseolus vulgaris
Phvul.002G081500 0.5kb upstream 0.5kb upstream 500 false Chr02: 12753404-12753903 Phaseolus vulgaris
Phvul.002G081500 0.5kb downstream 0.5kb downstream 4018 true Chr02: 12749386-12753403 Phaseolus vulgaris
Phvul.002G081500 0.5kb downstream 0.5kb downstream 500 false Chr02: 12749386-12749885 Phaseolus vulgaris
Phvul.002G081500 1.0kb upstream 1.0kb upstream 4518 true Chr02: 12749886-12754403 Phaseolus vulgaris
Phvul.002G081500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 12753404-12754403 Phaseolus vulgaris
Phvul.002G081500 1.0kb downstream 1.0kb downstream 4518 true Chr02: 12748886-12753403 Phaseolus vulgaris
Phvul.002G081500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 12748886-12749885 Phaseolus vulgaris
Phvul.002G081500 2.0kb upstream 2.0kb upstream 5518 true Chr02: 12749886-12755403 Phaseolus vulgaris
Phvul.002G081500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 12753404-12755403 Phaseolus vulgaris
Phvul.002G081500 2.0kb downstream 2.0kb downstream 5518 true Chr02: 12747886-12753403 Phaseolus vulgaris
Phvul.002G081500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 12747886-12749885 Phaseolus vulgaris
Phvul.002G081500 5.0kb upstream 5.0kb upstream 8518 true Chr02: 12749886-12758403 Phaseolus vulgaris
Phvul.002G081500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 12753404-12758403 Phaseolus vulgaris
Phvul.002G081500 5.0kb downstream 5.0kb downstream 8518 true Chr02: 12744886-12753403 Phaseolus vulgaris
Phvul.002G081500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 12744886-12749885 Phaseolus vulgaris
Phvul.002G081500 10.0kb upstream 10.0kb upstream 13518 true Chr02: 12749886-12763403 Phaseolus vulgaris
Phvul.002G081500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 12753404-12763403 Phaseolus vulgaris
Phvul.002G081500 10.0kb downstream 10.0kb downstream 13518 true Chr02: 12739886-12753403 Phaseolus vulgaris
Phvul.002G081500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 12739886-12749885 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312774 5265 Fabidae View MSA
124069233 5270 Rosid View MSA
123745951 5271 Pentapetalae View MSA
122796965 5272 Eudicot View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.1146 0.0 4.60772   High
cufflinks 0.129126 0.0 0.543709 Low  
cufflinks 0.0395975 0.0 0.189347 Low  
cufflinks 3.47662 0.0 14.4276   High
cufflinks 0.127599 0.0 0.546507 Low  
cufflinks 0.0290055 0.0 0.146083 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0362346 0.0 0.179923 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0377516 0.0 0.18674 Low  
cufflinks 0.0961349 0.0 0.41449 Low  

0 Strain