Gene : Phvul.002G082300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12161:SF23 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  828
Name:  ? Phvul.002G082300 Secondary Identifier:  ? PAC:37175260
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G082300 0.5kb upstream 0.5kb upstream 2793 true Chr02: 12984970-12987762 Phaseolus vulgaris
Phvul.002G082300 0.5kb upstream 0.5kb upstream 500 false Chr02: 12984970-12985469 Phaseolus vulgaris
Phvul.002G082300 0.5kb downstream 0.5kb downstream 2793 true Chr02: 12985470-12988262 Phaseolus vulgaris
Phvul.002G082300 0.5kb downstream 0.5kb downstream 500 false Chr02: 12987763-12988262 Phaseolus vulgaris
Phvul.002G082300 1.0kb upstream 1.0kb upstream 3293 true Chr02: 12984470-12987762 Phaseolus vulgaris
Phvul.002G082300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 12984470-12985469 Phaseolus vulgaris
Phvul.002G082300 1.0kb downstream 1.0kb downstream 3293 true Chr02: 12985470-12988762 Phaseolus vulgaris
Phvul.002G082300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 12987763-12988762 Phaseolus vulgaris
Phvul.002G082300 2.0kb upstream 2.0kb upstream 4293 true Chr02: 12983470-12987762 Phaseolus vulgaris
Phvul.002G082300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 12983470-12985469 Phaseolus vulgaris
Phvul.002G082300 2.0kb downstream 2.0kb downstream 4293 true Chr02: 12985470-12989762 Phaseolus vulgaris
Phvul.002G082300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 12987763-12989762 Phaseolus vulgaris
Phvul.002G082300 5.0kb upstream 5.0kb upstream 7293 true Chr02: 12980470-12987762 Phaseolus vulgaris
Phvul.002G082300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 12980470-12985469 Phaseolus vulgaris
Phvul.002G082300 5.0kb downstream 5.0kb downstream 7293 true Chr02: 12985470-12992762 Phaseolus vulgaris
Phvul.002G082300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 12987763-12992762 Phaseolus vulgaris
Phvul.002G082300 10.0kb upstream 10.0kb upstream 12293 true Chr02: 12975470-12987762 Phaseolus vulgaris
Phvul.002G082300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 12975470-12985469 Phaseolus vulgaris
Phvul.002G082300 10.0kb downstream 10.0kb downstream 12293 true Chr02: 12985470-12997762 Phaseolus vulgaris
Phvul.002G082300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 12987763-12997762 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308379 5265 Fabidae View MSA
124066653 5270 Rosid View MSA
123752989 5271 Pentapetalae View MSA
122793014 5272 Eudicot View MSA
122045384 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.23234 0.0 9.63525    
cufflinks 1.34134 0.0 4.41585    
cufflinks 0.322953 0.0 1.22225 Low Low
cufflinks 0.881016 0.0 3.06792    
cufflinks 1.76184 0.0 5.68093    
cufflinks 1.09176 0.0 3.67686    
cufflinks 5.17919 0.0 14.6286    
cufflinks 4.03201 0.0 11.6621    
cufflinks 1.42037 0.0 4.63855    
cufflinks 11.5969 0.0 30.7271   High
cufflinks 6.9234 0.0 19.1718   High

0 Strain