Gene : Phvul.002G080300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR16263:SF4 - TETRATRICOPEPTIDE REPEAT PROTEIN 38 Genomic Order:  807
Name:  ? Phvul.002G080300 Secondary Identifier:  ? PAC:37176564
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G080300 0.5kb upstream 0.5kb upstream 6288 true Chr02: 12513754-12520041 Phaseolus vulgaris
Phvul.002G080300 0.5kb upstream 0.5kb upstream 500 false Chr02: 12513754-12514253 Phaseolus vulgaris
Phvul.002G080300 0.5kb downstream 0.5kb downstream 6288 true Chr02: 12514254-12520541 Phaseolus vulgaris
Phvul.002G080300 0.5kb downstream 0.5kb downstream 500 false Chr02: 12520042-12520541 Phaseolus vulgaris
Phvul.002G080300 1.0kb upstream 1.0kb upstream 6788 true Chr02: 12513254-12520041 Phaseolus vulgaris
Phvul.002G080300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 12513254-12514253 Phaseolus vulgaris
Phvul.002G080300 1.0kb downstream 1.0kb downstream 6788 true Chr02: 12514254-12521041 Phaseolus vulgaris
Phvul.002G080300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 12520042-12521041 Phaseolus vulgaris
Phvul.002G080300 2.0kb upstream 2.0kb upstream 7788 true Chr02: 12512254-12520041 Phaseolus vulgaris
Phvul.002G080300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 12512254-12514253 Phaseolus vulgaris
Phvul.002G080300 2.0kb downstream 2.0kb downstream 7788 true Chr02: 12514254-12522041 Phaseolus vulgaris
Phvul.002G080300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 12520042-12522041 Phaseolus vulgaris
Phvul.002G080300 5.0kb upstream 5.0kb upstream 10788 true Chr02: 12509254-12520041 Phaseolus vulgaris
Phvul.002G080300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 12509254-12514253 Phaseolus vulgaris
Phvul.002G080300 5.0kb downstream 5.0kb downstream 10788 true Chr02: 12514254-12525041 Phaseolus vulgaris
Phvul.002G080300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 12520042-12525041 Phaseolus vulgaris
Phvul.002G080300 10.0kb upstream 10.0kb upstream 15788 true Chr02: 12504254-12520041 Phaseolus vulgaris
Phvul.002G080300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 12504254-12514253 Phaseolus vulgaris
Phvul.002G080300 10.0kb downstream 10.0kb downstream 15788 true Chr02: 12514254-12530041 Phaseolus vulgaris
Phvul.002G080300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 12520042-12530041 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302716 5265 Fabidae View MSA
124066695 5270 Rosid View MSA
123740616 5271 Pentapetalae View MSA
122790919 5272 Eudicot View MSA
122043704 5273 Angiosperm View MSA
121346225 5274 Embryophyte View MSA
123380350 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.8198 0.0 41.0576    
cufflinks 6.70313 0.0 18.4039    
cufflinks 8.18783 0.0 22.0465    
cufflinks 12.103 0.0 31.9773    
cufflinks 5.4821 0.0 15.4436   Low
cufflinks 8.62203 0.0 23.154    
cufflinks 14.7265 0.0 38.3419    
cufflinks 22.5528 0.0 58.3156   High
cufflinks 16.5504 0.0 42.9573   High
cufflinks 6.90758 0.0 18.9363    
cufflinks 6.60691 0.0 18.2582    

0 Strain