Gene : Phvul.002G085100 P. vulgaris v2.1
Defline:  (1 of 2) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  856
Name:  ? Phvul.002G085100 Secondary Identifier:  ? PAC:37174526
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G085100 0.5kb upstream 0.5kb upstream 4842 true Chr02: 13757812-13762653 Phaseolus vulgaris
Phvul.002G085100 0.5kb upstream 0.5kb upstream 500 false Chr02: 13757812-13758311 Phaseolus vulgaris
Phvul.002G085100 0.5kb downstream 0.5kb downstream 4842 true Chr02: 13758312-13763153 Phaseolus vulgaris
Phvul.002G085100 0.5kb downstream 0.5kb downstream 500 false Chr02: 13762654-13763153 Phaseolus vulgaris
Phvul.002G085100 1.0kb upstream 1.0kb upstream 5342 true Chr02: 13757312-13762653 Phaseolus vulgaris
Phvul.002G085100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 13757312-13758311 Phaseolus vulgaris
Phvul.002G085100 1.0kb downstream 1.0kb downstream 5342 true Chr02: 13758312-13763653 Phaseolus vulgaris
Phvul.002G085100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 13762654-13763653 Phaseolus vulgaris
Phvul.002G085100 2.0kb upstream 2.0kb upstream 6342 true Chr02: 13756312-13762653 Phaseolus vulgaris
Phvul.002G085100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 13756312-13758311 Phaseolus vulgaris
Phvul.002G085100 2.0kb downstream 2.0kb downstream 6342 true Chr02: 13758312-13764653 Phaseolus vulgaris
Phvul.002G085100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 13762654-13764653 Phaseolus vulgaris
Phvul.002G085100 5.0kb upstream 5.0kb upstream 9342 true Chr02: 13753312-13762653 Phaseolus vulgaris
Phvul.002G085100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 13753312-13758311 Phaseolus vulgaris
Phvul.002G085100 5.0kb downstream 5.0kb downstream 9342 true Chr02: 13758312-13767653 Phaseolus vulgaris
Phvul.002G085100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 13762654-13767653 Phaseolus vulgaris
Phvul.002G085100 10.0kb upstream 10.0kb upstream 14342 true Chr02: 13748312-13762653 Phaseolus vulgaris
Phvul.002G085100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 13748312-13758311 Phaseolus vulgaris
Phvul.002G085100 10.0kb downstream 10.0kb downstream 14342 true Chr02: 13758312-13772653 Phaseolus vulgaris
Phvul.002G085100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 13762654-13772653 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304884 5265 Fabidae View MSA
124066090 5270 Rosid View MSA
123749882 5271 Pentapetalae View MSA
122789988 5272 Eudicot View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.7551 0.0 27.8017   Low
cufflinks 28.5276 0.0 76.68    
cufflinks 32.3026 0.0 87.9643    
cufflinks 14.8254 0.0 38.3985   Low
cufflinks 24.8078 0.0 65.8599    
cufflinks 32.8835 0.0 89.4945 High  
cufflinks 22.7455 0.0 60.1281    
cufflinks 25.179 0.0 67.163    
cufflinks 34.5404 0.0 94.2281 High High
cufflinks 29.139 0.0 78.5315    
cufflinks 21.7157 0.0 57.1497    

0 Strain