Gene : Phvul.002G072200 P. vulgaris v2.1
Defline:  (1 of 4) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  725
Name:  ? Phvul.002G072200 Secondary Identifier:  ? PAC:37176507
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris BSUBPOLYAMSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris POLYAMINSYN3-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-7528 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G072200 0.5kb upstream 0.5kb upstream 3576 true Chr02: 10608175-10611750 Phaseolus vulgaris
Phvul.002G072200 0.5kb upstream 0.5kb upstream 500 false Chr02: 10608175-10608674 Phaseolus vulgaris
Phvul.002G072200 0.5kb downstream 0.5kb downstream 3576 true Chr02: 10608675-10612250 Phaseolus vulgaris
Phvul.002G072200 0.5kb downstream 0.5kb downstream 500 false Chr02: 10611751-10612250 Phaseolus vulgaris
Phvul.002G072200 1.0kb upstream 1.0kb upstream 4076 true Chr02: 10607675-10611750 Phaseolus vulgaris
Phvul.002G072200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 10607675-10608674 Phaseolus vulgaris
Phvul.002G072200 1.0kb downstream 1.0kb downstream 4076 true Chr02: 10608675-10612750 Phaseolus vulgaris
Phvul.002G072200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 10611751-10612750 Phaseolus vulgaris
Phvul.002G072200 2.0kb upstream 2.0kb upstream 5076 true Chr02: 10606675-10611750 Phaseolus vulgaris
Phvul.002G072200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 10606675-10608674 Phaseolus vulgaris
Phvul.002G072200 2.0kb downstream 2.0kb downstream 5076 true Chr02: 10608675-10613750 Phaseolus vulgaris
Phvul.002G072200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 10611751-10613750 Phaseolus vulgaris
Phvul.002G072200 5.0kb upstream 5.0kb upstream 8076 true Chr02: 10603675-10611750 Phaseolus vulgaris
Phvul.002G072200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 10603675-10608674 Phaseolus vulgaris
Phvul.002G072200 5.0kb downstream 5.0kb downstream 8076 true Chr02: 10608675-10616750 Phaseolus vulgaris
Phvul.002G072200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 10611751-10616750 Phaseolus vulgaris
Phvul.002G072200 10.0kb upstream 10.0kb upstream 13076 true Chr02: 10598675-10611750 Phaseolus vulgaris
Phvul.002G072200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 10598675-10608674 Phaseolus vulgaris
Phvul.002G072200 10.0kb downstream 10.0kb downstream 13076 true Chr02: 10608675-10621750 Phaseolus vulgaris
Phvul.002G072200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 10611751-10621750 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.5361 0.0 94.4431 High High
cufflinks 29.9734 0.0 77.5823    
cufflinks 18.8096 0.0 49.4551    
cufflinks 45.1645 0.0 116.896 High High
cufflinks 21.0855 0.0 55.3486    
cufflinks 12.0574 0.0 32.826   Low
cufflinks 21.9226 0.0 57.3349    
cufflinks 30.9252 0.0 80.0063 High  
cufflinks 33.1499 0.0 85.731 High  
cufflinks 24.4063 0.0 63.5063    
cufflinks 19.6721 0.0 51.7558    

0 Strain