Gene : Phvul.002G073600 P. vulgaris v2.1
Defline:  (1 of 6) PTHR32285:SF57 - PROTEIN ALTERED XYLOGLUCAN 4 Genomic Order:  740
Name:  ? Phvul.002G073600 Secondary Identifier:  ? PAC:37177265
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G073600 0.5kb upstream 0.5kb upstream 3029 true Chr02: 11006400-11009428 Phaseolus vulgaris
Phvul.002G073600 0.5kb upstream 0.5kb upstream 500 false Chr02: 11008929-11009428 Phaseolus vulgaris
Phvul.002G073600 0.5kb downstream 0.5kb downstream 3029 true Chr02: 11005900-11008928 Phaseolus vulgaris
Phvul.002G073600 0.5kb downstream 0.5kb downstream 500 false Chr02: 11005900-11006399 Phaseolus vulgaris
Phvul.002G073600 1.0kb upstream 1.0kb upstream 3529 true Chr02: 11006400-11009928 Phaseolus vulgaris
Phvul.002G073600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 11008929-11009928 Phaseolus vulgaris
Phvul.002G073600 1.0kb downstream 1.0kb downstream 3529 true Chr02: 11005400-11008928 Phaseolus vulgaris
Phvul.002G073600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 11005400-11006399 Phaseolus vulgaris
Phvul.002G073600 2.0kb upstream 2.0kb upstream 4529 true Chr02: 11006400-11010928 Phaseolus vulgaris
Phvul.002G073600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 11008929-11010928 Phaseolus vulgaris
Phvul.002G073600 2.0kb downstream 2.0kb downstream 4529 true Chr02: 11004400-11008928 Phaseolus vulgaris
Phvul.002G073600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 11004400-11006399 Phaseolus vulgaris
Phvul.002G073600 5.0kb upstream 5.0kb upstream 7529 true Chr02: 11006400-11013928 Phaseolus vulgaris
Phvul.002G073600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 11008929-11013928 Phaseolus vulgaris
Phvul.002G073600 5.0kb downstream 5.0kb downstream 7529 true Chr02: 11001400-11008928 Phaseolus vulgaris
Phvul.002G073600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 11001400-11006399 Phaseolus vulgaris
Phvul.002G073600 10.0kb upstream 10.0kb upstream 12529 true Chr02: 11006400-11018928 Phaseolus vulgaris
Phvul.002G073600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 11008929-11018928 Phaseolus vulgaris
Phvul.002G073600 10.0kb downstream 10.0kb downstream 12529 true Chr02: 10996400-11008928 Phaseolus vulgaris
Phvul.002G073600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 10996400-11006399 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300392 5265 Fabidae View MSA
124062757 5270 Rosid View MSA
123750797 5271 Pentapetalae View MSA
122786909 5272 Eudicot View MSA
122044387 5273 Angiosperm View MSA
121310287 5274 Embryophyte View MSA
123347814 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4032 0.0 37.5923    
cufflinks 9.40738 0.0 34.0817    
cufflinks 8.8195 0.0 32.1877    
cufflinks 6.19187 0.0 24.1947   Low
cufflinks 8.87729 0.0 35.6221    
cufflinks 7.32863 0.0 27.1665    
cufflinks 12.2172 0.0 42.6059    
cufflinks 13.4234 0.0 45.31   High
cufflinks 16.2941 0.0 52.9469   High
cufflinks 7.25714 0.0 27.5802   Low
cufflinks 11.3073 0.0 33.7783    

0 Strain