Gene : Phvul.002G074600 P. vulgaris v2.1
Defline:  (1 of 4) K02941 - large subunit ribosomal protein LP0 (RP-LP0, RPLP0) Genomic Order:  750
Name:  ? Phvul.002G074600 Secondary Identifier:  ? PAC:37177733
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G074600 0.5kb upstream 0.5kb upstream 2920 true Chr02: 11171098-11174017 Phaseolus vulgaris
Phvul.002G074600 0.5kb upstream 0.5kb upstream 500 false Chr02: 11173518-11174017 Phaseolus vulgaris
Phvul.002G074600 0.5kb downstream 0.5kb downstream 2920 true Chr02: 11170598-11173517 Phaseolus vulgaris
Phvul.002G074600 0.5kb downstream 0.5kb downstream 500 false Chr02: 11170598-11171097 Phaseolus vulgaris
Phvul.002G074600 1.0kb upstream 1.0kb upstream 3420 true Chr02: 11171098-11174517 Phaseolus vulgaris
Phvul.002G074600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 11173518-11174517 Phaseolus vulgaris
Phvul.002G074600 1.0kb downstream 1.0kb downstream 3420 true Chr02: 11170098-11173517 Phaseolus vulgaris
Phvul.002G074600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 11170098-11171097 Phaseolus vulgaris
Phvul.002G074600 2.0kb upstream 2.0kb upstream 4420 true Chr02: 11171098-11175517 Phaseolus vulgaris
Phvul.002G074600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 11173518-11175517 Phaseolus vulgaris
Phvul.002G074600 2.0kb downstream 2.0kb downstream 4420 true Chr02: 11169098-11173517 Phaseolus vulgaris
Phvul.002G074600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 11169098-11171097 Phaseolus vulgaris
Phvul.002G074600 5.0kb upstream 5.0kb upstream 7420 true Chr02: 11171098-11178517 Phaseolus vulgaris
Phvul.002G074600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 11173518-11178517 Phaseolus vulgaris
Phvul.002G074600 5.0kb downstream 5.0kb downstream 7420 true Chr02: 11166098-11173517 Phaseolus vulgaris
Phvul.002G074600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 11166098-11171097 Phaseolus vulgaris
Phvul.002G074600 10.0kb upstream 10.0kb upstream 12420 true Chr02: 11171098-11183517 Phaseolus vulgaris
Phvul.002G074600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 11173518-11183517 Phaseolus vulgaris
Phvul.002G074600 10.0kb downstream 10.0kb downstream 12420 true Chr02: 11161098-11173517 Phaseolus vulgaris
Phvul.002G074600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 11161098-11171097 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251047 5265 Fabidae Singleton cluster - no MSA
124061567 5270 Rosid View MSA
123747108 5271 Pentapetalae View MSA
122786385 5272 Eudicot View MSA
122042027 5273 Angiosperm View MSA
121345246 5274 Embryophyte View MSA
123428323 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.03 0.0 116.844 High  
cufflinks 55.4506 0.0 144.982 High  
cufflinks 26.3996 0.0 68.3758   Low
cufflinks 38.1938 0.0 98.7697 High  
cufflinks 51.1657 0.0 133.276 High  
cufflinks 21.0061 0.0 54.8489   Low
cufflinks 41.5735 0.0 107.68 High  
cufflinks 39.9105 0.0 103.284 High  
cufflinks 67.9597 0.0 179.63 High High
cufflinks 27.2252 0.0 70.5261   Low
cufflinks 41.2837 0.0 106.898 High  

0 Strain