Gene : Phvul.002G061300 P. vulgaris v2.1
Defline:  (1 of 15) PF04640 - PLATZ transcription factor (PLATZ) Genomic Order:  613
Name:  ? Phvul.002G061300 Secondary Identifier:  ? PAC:37177820
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G061300 0.5kb upstream 0.5kb upstream 1692 true Chr02: 7143996-7145687 Phaseolus vulgaris
Phvul.002G061300 0.5kb upstream 0.5kb upstream 500 false Chr02: 7143996-7144495 Phaseolus vulgaris
Phvul.002G061300 0.5kb downstream 0.5kb downstream 1692 true Chr02: 7144496-7146187 Phaseolus vulgaris
Phvul.002G061300 0.5kb downstream 0.5kb downstream 500 false Chr02: 7145688-7146187 Phaseolus vulgaris
Phvul.002G061300 1.0kb upstream 1.0kb upstream 2192 true Chr02: 7143496-7145687 Phaseolus vulgaris
Phvul.002G061300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 7143496-7144495 Phaseolus vulgaris
Phvul.002G061300 1.0kb downstream 1.0kb downstream 2192 true Chr02: 7144496-7146687 Phaseolus vulgaris
Phvul.002G061300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 7145688-7146687 Phaseolus vulgaris
Phvul.002G061300 2.0kb upstream 2.0kb upstream 3192 true Chr02: 7142496-7145687 Phaseolus vulgaris
Phvul.002G061300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 7142496-7144495 Phaseolus vulgaris
Phvul.002G061300 2.0kb downstream 2.0kb downstream 3192 true Chr02: 7144496-7147687 Phaseolus vulgaris
Phvul.002G061300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 7145688-7147687 Phaseolus vulgaris
Phvul.002G061300 5.0kb upstream 5.0kb upstream 6192 true Chr02: 7139496-7145687 Phaseolus vulgaris
Phvul.002G061300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 7139496-7144495 Phaseolus vulgaris
Phvul.002G061300 5.0kb downstream 5.0kb downstream 6192 true Chr02: 7144496-7150687 Phaseolus vulgaris
Phvul.002G061300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 7145688-7150687 Phaseolus vulgaris
Phvul.002G061300 10.0kb upstream 10.0kb upstream 11192 true Chr02: 7134496-7145687 Phaseolus vulgaris
Phvul.002G061300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 7134496-7144495 Phaseolus vulgaris
Phvul.002G061300 10.0kb downstream 10.0kb downstream 11192 true Chr02: 7144496-7155687 Phaseolus vulgaris
Phvul.002G061300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 7145688-7155687 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254818 5265 Fabidae View MSA
124069177 5270 Rosid View MSA
123750215 5271 Pentapetalae View MSA
122789413 5272 Eudicot View MSA
122043598 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.77678 0.0 9.63882   High
cufflinks 1.44739 0.0 5.33639    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.195152 0.0 0.846267 Low Low
cufflinks 0.394768 0.0 1.62468 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.243364 0.0 1.03611 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.38048 0.0 1.55466 Low  
cufflinks 2.63647 0.0 9.22168   High
cufflinks 0.28753 0.0 1.2125 Low  

0 Strain