Gene : Phvul.002G054600 P. vulgaris v2.1
Defline:  (1 of 1) K12600 - superkiller protein 3 (SKI3, TTC37) Genomic Order:  545
Name:  ? Phvul.002G054600 Secondary Identifier:  ? PAC:37178564
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G054600 0.5kb upstream 0.5kb upstream 9838 true Chr02: 4949496-4959333 Phaseolus vulgaris
Phvul.002G054600 0.5kb upstream 0.5kb upstream 500 false Chr02: 4958834-4959333 Phaseolus vulgaris
Phvul.002G054600 0.5kb downstream 0.5kb downstream 9838 true Chr02: 4948996-4958833 Phaseolus vulgaris
Phvul.002G054600 0.5kb downstream 0.5kb downstream 500 false Chr02: 4948996-4949495 Phaseolus vulgaris
Phvul.002G054600 1.0kb upstream 1.0kb upstream 10338 true Chr02: 4949496-4959833 Phaseolus vulgaris
Phvul.002G054600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4958834-4959833 Phaseolus vulgaris
Phvul.002G054600 1.0kb downstream 1.0kb downstream 10338 true Chr02: 4948496-4958833 Phaseolus vulgaris
Phvul.002G054600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4948496-4949495 Phaseolus vulgaris
Phvul.002G054600 2.0kb upstream 2.0kb upstream 11338 true Chr02: 4949496-4960833 Phaseolus vulgaris
Phvul.002G054600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4958834-4960833 Phaseolus vulgaris
Phvul.002G054600 2.0kb downstream 2.0kb downstream 11338 true Chr02: 4947496-4958833 Phaseolus vulgaris
Phvul.002G054600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4947496-4949495 Phaseolus vulgaris
Phvul.002G054600 5.0kb upstream 5.0kb upstream 14338 true Chr02: 4949496-4963833 Phaseolus vulgaris
Phvul.002G054600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4958834-4963833 Phaseolus vulgaris
Phvul.002G054600 5.0kb downstream 5.0kb downstream 14338 true Chr02: 4944496-4958833 Phaseolus vulgaris
Phvul.002G054600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4944496-4949495 Phaseolus vulgaris
Phvul.002G054600 10.0kb upstream 10.0kb upstream 19338 true Chr02: 4949496-4968833 Phaseolus vulgaris
Phvul.002G054600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4958834-4968833 Phaseolus vulgaris
Phvul.002G054600 10.0kb downstream 10.0kb downstream 19338 true Chr02: 4939496-4958833 Phaseolus vulgaris
Phvul.002G054600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4939496-4949495 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306909 5265 Fabidae View MSA
124063123 5270 Rosid View MSA
123737260 5271 Pentapetalae View MSA
122791568 5272 Eudicot View MSA
122046967 5273 Angiosperm View MSA
121344761 5274 Embryophyte View MSA
123425993 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.26996 0.0 4.10599   Low
cufflinks 5.3583 0.0 18.6719    
cufflinks 8.79101 0.0 28.2237    
cufflinks 2.23404 0.0 7.93309   Low
cufflinks 6.89242 0.0 22.9001    
cufflinks 11.7734 0.0 49.4004    
cufflinks 10.3627 0.0 47.8936    
cufflinks 11.3967 0.0 46.5723    
cufflinks 7.65712 0.0 25.3203    
cufflinks 10.3319 0.0 43.1951    
cufflinks 4.4202 0.0 20.9873    

0 Strain