Gene : Phvul.002G058300 P. vulgaris v2.1
Defline:  (1 of 1) K13153 - U11/U12 small nuclear ribonucleoprotein 25 kDa protein (SNRNP25) Genomic Order:  582
Name:  ? Phvul.002G058300 Secondary Identifier:  ? PAC:37176226
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G058300 0.5kb upstream 0.5kb upstream 5506 true Chr02: 6199068-6204573 Phaseolus vulgaris
Phvul.002G058300 0.5kb upstream 0.5kb upstream 500 false Chr02: 6204074-6204573 Phaseolus vulgaris
Phvul.002G058300 0.5kb downstream 0.5kb downstream 5506 true Chr02: 6198568-6204073 Phaseolus vulgaris
Phvul.002G058300 0.5kb downstream 0.5kb downstream 500 false Chr02: 6198568-6199067 Phaseolus vulgaris
Phvul.002G058300 1.0kb upstream 1.0kb upstream 6006 true Chr02: 6199068-6205073 Phaseolus vulgaris
Phvul.002G058300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 6204074-6205073 Phaseolus vulgaris
Phvul.002G058300 1.0kb downstream 1.0kb downstream 6006 true Chr02: 6198068-6204073 Phaseolus vulgaris
Phvul.002G058300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 6198068-6199067 Phaseolus vulgaris
Phvul.002G058300 2.0kb upstream 2.0kb upstream 7006 true Chr02: 6199068-6206073 Phaseolus vulgaris
Phvul.002G058300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 6204074-6206073 Phaseolus vulgaris
Phvul.002G058300 2.0kb downstream 2.0kb downstream 7006 true Chr02: 6197068-6204073 Phaseolus vulgaris
Phvul.002G058300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 6197068-6199067 Phaseolus vulgaris
Phvul.002G058300 5.0kb upstream 5.0kb upstream 10006 true Chr02: 6199068-6209073 Phaseolus vulgaris
Phvul.002G058300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 6204074-6209073 Phaseolus vulgaris
Phvul.002G058300 5.0kb downstream 5.0kb downstream 10006 true Chr02: 6194068-6204073 Phaseolus vulgaris
Phvul.002G058300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 6194068-6199067 Phaseolus vulgaris
Phvul.002G058300 10.0kb upstream 10.0kb upstream 15006 true Chr02: 6199068-6214073 Phaseolus vulgaris
Phvul.002G058300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 6204074-6214073 Phaseolus vulgaris
Phvul.002G058300 10.0kb downstream 10.0kb downstream 15006 true Chr02: 6189068-6204073 Phaseolus vulgaris
Phvul.002G058300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 6189068-6199067 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310131 5265 Fabidae View MSA
124062835 5270 Rosid View MSA
123752628 5271 Pentapetalae View MSA
122791524 5272 Eudicot View MSA
122043205 5273 Angiosperm View MSA
121348620 5274 Embryophyte View MSA
123380941 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.93597 0.0 10.3895    
cufflinks 3.04763 0.0 10.7352    
cufflinks 2.12917 0.0 8.46038   Low
cufflinks 3.56635 0.0 12.624   High
cufflinks 3.1691 0.0 11.5058    
cufflinks 3.34772 0.0 12.4414    
cufflinks 2.49486 0.0 10.1172    
cufflinks 2.3662 0.0 9.46423    
cufflinks 1.91825 0.0 7.57012   Low
cufflinks 3.16911 0.0 11.4029    
cufflinks 2.86801 0.0 10.246    

0 Strain