Gene : Phvul.002G060000 P. vulgaris v2.1
Defline:  (1 of 3) PTHR33593:SF2 - F5O11.5 Genomic Order:  600
Name:  ? Phvul.002G060000 Secondary Identifier:  ? PAC:37178584
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G060000 0.5kb upstream 0.5kb upstream 1578 true Chr02: 6592010-6593587 Phaseolus vulgaris
Phvul.002G060000 0.5kb upstream 0.5kb upstream 500 false Chr02: 6593088-6593587 Phaseolus vulgaris
Phvul.002G060000 0.5kb downstream 0.5kb downstream 1578 true Chr02: 6591510-6593087 Phaseolus vulgaris
Phvul.002G060000 0.5kb downstream 0.5kb downstream 500 false Chr02: 6591510-6592009 Phaseolus vulgaris
Phvul.002G060000 1.0kb upstream 1.0kb upstream 2078 true Chr02: 6592010-6594087 Phaseolus vulgaris
Phvul.002G060000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 6593088-6594087 Phaseolus vulgaris
Phvul.002G060000 1.0kb downstream 1.0kb downstream 2078 true Chr02: 6591010-6593087 Phaseolus vulgaris
Phvul.002G060000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 6591010-6592009 Phaseolus vulgaris
Phvul.002G060000 2.0kb upstream 2.0kb upstream 3078 true Chr02: 6592010-6595087 Phaseolus vulgaris
Phvul.002G060000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 6593088-6595087 Phaseolus vulgaris
Phvul.002G060000 2.0kb downstream 2.0kb downstream 3078 true Chr02: 6590010-6593087 Phaseolus vulgaris
Phvul.002G060000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 6590010-6592009 Phaseolus vulgaris
Phvul.002G060000 5.0kb upstream 5.0kb upstream 6078 true Chr02: 6592010-6598087 Phaseolus vulgaris
Phvul.002G060000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 6593088-6598087 Phaseolus vulgaris
Phvul.002G060000 5.0kb downstream 5.0kb downstream 6078 true Chr02: 6587010-6593087 Phaseolus vulgaris
Phvul.002G060000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 6587010-6592009 Phaseolus vulgaris
Phvul.002G060000 10.0kb upstream 10.0kb upstream 11078 true Chr02: 6592010-6603087 Phaseolus vulgaris
Phvul.002G060000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 6593088-6603087 Phaseolus vulgaris
Phvul.002G060000 10.0kb downstream 10.0kb downstream 11078 true Chr02: 6582010-6593087 Phaseolus vulgaris
Phvul.002G060000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 6582010-6592009 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041482 5273 Angiosperm View MSA
122310790 5265 Fabidae View MSA
124070642 5270 Rosid View MSA
123743657 5271 Pentapetalae View MSA
122790548 5272 Eudicot View MSA
121348528 5274 Embryophyte View MSA
123380900 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.06349 0.0 15.0569    
cufflinks 4.57628 0.0 13.7602    
cufflinks 3.79148 0.0 11.8433    
cufflinks 1.39417 0.0 4.79753   Low
cufflinks 5.80223 0.0 16.9429    
cufflinks 3.22005 0.0 10.121    
cufflinks 2.87788 0.0 9.04764    
cufflinks 1.33407 0.0 4.63297   Low
cufflinks 4.11566 0.0 12.4312    
cufflinks 4.59457 0.0 13.7344    
cufflinks 7.94067 0.0 22.2963   High

0 Strain