Gene : Phvul.002G052100 P. vulgaris v2.1
Defline:  (1 of 4) PTHR16223:SF9 - TRANSCRIPTION FACTOR BHLH139-RELATED Genomic Order:  520
Name:  ? Phvul.002G052100 Secondary Identifier:  ? PAC:37175187
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G052100 0.5kb upstream 0.5kb upstream 1938 true Chr02: 4777183-4779120 Phaseolus vulgaris
Phvul.002G052100 0.5kb upstream 0.5kb upstream 500 false Chr02: 4778621-4779120 Phaseolus vulgaris
Phvul.002G052100 0.5kb downstream 0.5kb downstream 1938 true Chr02: 4776683-4778620 Phaseolus vulgaris
Phvul.002G052100 0.5kb downstream 0.5kb downstream 500 false Chr02: 4776683-4777182 Phaseolus vulgaris
Phvul.002G052100 1.0kb upstream 1.0kb upstream 2438 true Chr02: 4777183-4779620 Phaseolus vulgaris
Phvul.002G052100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4778621-4779620 Phaseolus vulgaris
Phvul.002G052100 1.0kb downstream 1.0kb downstream 2438 true Chr02: 4776183-4778620 Phaseolus vulgaris
Phvul.002G052100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4776183-4777182 Phaseolus vulgaris
Phvul.002G052100 2.0kb upstream 2.0kb upstream 3438 true Chr02: 4777183-4780620 Phaseolus vulgaris
Phvul.002G052100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4778621-4780620 Phaseolus vulgaris
Phvul.002G052100 2.0kb downstream 2.0kb downstream 3438 true Chr02: 4775183-4778620 Phaseolus vulgaris
Phvul.002G052100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4775183-4777182 Phaseolus vulgaris
Phvul.002G052100 5.0kb upstream 5.0kb upstream 6438 true Chr02: 4777183-4783620 Phaseolus vulgaris
Phvul.002G052100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4778621-4783620 Phaseolus vulgaris
Phvul.002G052100 5.0kb downstream 5.0kb downstream 6438 true Chr02: 4772183-4778620 Phaseolus vulgaris
Phvul.002G052100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4772183-4777182 Phaseolus vulgaris
Phvul.002G052100 10.0kb upstream 10.0kb upstream 11438 true Chr02: 4777183-4788620 Phaseolus vulgaris
Phvul.002G052100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4778621-4788620 Phaseolus vulgaris
Phvul.002G052100 10.0kb downstream 10.0kb downstream 11438 true Chr02: 4767183-4778620 Phaseolus vulgaris
Phvul.002G052100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4767183-4777182 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251217 5265 Fabidae Singleton cluster - no MSA
124042441 5270 Rosid View MSA
123748032 5271 Pentapetalae View MSA
122792151 5272 Eudicot View MSA
122043833 5273 Angiosperm View MSA
121310197 5274 Embryophyte View MSA
123347755 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0641446 0.0 0.301194 Low  
cufflinks 0.0444031 0.0 0.21409 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.108323 0.0 0.474312 Low  
cufflinks 0.244294 0.0 0.998196 Low High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain