Gene : Phvul.002G176700 P. vulgaris v2.1
Defline:  (1 of 1) K18173 - cytochrome c oxidase assembly factor 1 (COA1) Genomic Order:  1746
Name:  ? Phvul.002G176700 Secondary Identifier:  ? PAC:37176276
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G176700 0.5kb upstream 0.5kb upstream 2601 true Chr02: 33519967-33522567 Phaseolus vulgaris
Phvul.002G176700 0.5kb upstream 0.5kb upstream 500 false Chr02: 33519967-33520466 Phaseolus vulgaris
Phvul.002G176700 0.5kb downstream 0.5kb downstream 2601 true Chr02: 33520467-33523067 Phaseolus vulgaris
Phvul.002G176700 0.5kb downstream 0.5kb downstream 500 false Chr02: 33522568-33523067 Phaseolus vulgaris
Phvul.002G176700 1.0kb upstream 1.0kb upstream 3101 true Chr02: 33519467-33522567 Phaseolus vulgaris
Phvul.002G176700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33519467-33520466 Phaseolus vulgaris
Phvul.002G176700 1.0kb downstream 1.0kb downstream 3101 true Chr02: 33520467-33523567 Phaseolus vulgaris
Phvul.002G176700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33522568-33523567 Phaseolus vulgaris
Phvul.002G176700 2.0kb upstream 2.0kb upstream 4101 true Chr02: 33518467-33522567 Phaseolus vulgaris
Phvul.002G176700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33518467-33520466 Phaseolus vulgaris
Phvul.002G176700 2.0kb downstream 2.0kb downstream 4101 true Chr02: 33520467-33524567 Phaseolus vulgaris
Phvul.002G176700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33522568-33524567 Phaseolus vulgaris
Phvul.002G176700 5.0kb upstream 5.0kb upstream 7101 true Chr02: 33515467-33522567 Phaseolus vulgaris
Phvul.002G176700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33515467-33520466 Phaseolus vulgaris
Phvul.002G176700 5.0kb downstream 5.0kb downstream 7101 true Chr02: 33520467-33527567 Phaseolus vulgaris
Phvul.002G176700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33522568-33527567 Phaseolus vulgaris
Phvul.002G176700 10.0kb upstream 10.0kb upstream 12101 true Chr02: 33510467-33522567 Phaseolus vulgaris
Phvul.002G176700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33510467-33520466 Phaseolus vulgaris
Phvul.002G176700 10.0kb downstream 10.0kb downstream 12101 true Chr02: 33520467-33532567 Phaseolus vulgaris
Phvul.002G176700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33522568-33532567 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307470 5265 Fabidae View MSA
124064584 5270 Rosid View MSA
123738180 5271 Pentapetalae View MSA
122790598 5272 Eudicot View MSA
122045989 5273 Angiosperm View MSA
123429076 5275 Viridiplantae View MSA
121346090 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.4356 0.0 49.5407    
cufflinks 11.7885 0.0 41.6699    
cufflinks 25.6996 0.0 81.9027   High
cufflinks 13.0686 0.0 45.928    
cufflinks 8.59939 0.0 28.1904    
cufflinks 19.0949 0.0 62.3368   High
cufflinks 5.42046 0.0 22.7271   Low
cufflinks 5.16639 0.0 18.5939   Low
cufflinks 6.02965 0.0 21.2059    
cufflinks 6.51988 0.0 22.4629    
cufflinks 7.81617 0.0 30.2575    

0 Strain