Gene : Phvul.002G177400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22536 - LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN Genomic Order:  1753
Name:  ? Phvul.002G177400 Secondary Identifier:  ? PAC:37177492
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G177400 0.5kb upstream 0.5kb upstream 6008 true Chr02: 33622920-33628927 Phaseolus vulgaris
Phvul.002G177400 0.5kb upstream 0.5kb upstream 500 false Chr02: 33622920-33623419 Phaseolus vulgaris
Phvul.002G177400 0.5kb downstream 0.5kb downstream 6008 true Chr02: 33623420-33629427 Phaseolus vulgaris
Phvul.002G177400 0.5kb downstream 0.5kb downstream 500 false Chr02: 33628928-33629427 Phaseolus vulgaris
Phvul.002G177400 1.0kb upstream 1.0kb upstream 6508 true Chr02: 33622420-33628927 Phaseolus vulgaris
Phvul.002G177400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33622420-33623419 Phaseolus vulgaris
Phvul.002G177400 1.0kb downstream 1.0kb downstream 6508 true Chr02: 33623420-33629927 Phaseolus vulgaris
Phvul.002G177400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33628928-33629927 Phaseolus vulgaris
Phvul.002G177400 2.0kb upstream 2.0kb upstream 7508 true Chr02: 33621420-33628927 Phaseolus vulgaris
Phvul.002G177400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33621420-33623419 Phaseolus vulgaris
Phvul.002G177400 2.0kb downstream 2.0kb downstream 7508 true Chr02: 33623420-33630927 Phaseolus vulgaris
Phvul.002G177400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33628928-33630927 Phaseolus vulgaris
Phvul.002G177400 5.0kb upstream 5.0kb upstream 10508 true Chr02: 33618420-33628927 Phaseolus vulgaris
Phvul.002G177400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33618420-33623419 Phaseolus vulgaris
Phvul.002G177400 5.0kb downstream 5.0kb downstream 10508 true Chr02: 33623420-33633927 Phaseolus vulgaris
Phvul.002G177400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33628928-33633927 Phaseolus vulgaris
Phvul.002G177400 10.0kb upstream 10.0kb upstream 15508 true Chr02: 33613420-33628927 Phaseolus vulgaris
Phvul.002G177400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33613420-33623419 Phaseolus vulgaris
Phvul.002G177400 10.0kb downstream 10.0kb downstream 15508 true Chr02: 33623420-33638927 Phaseolus vulgaris
Phvul.002G177400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33628928-33638927 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296715 5265 Fabidae View MSA
124074053 5270 Rosid View MSA
123743720 5271 Pentapetalae View MSA
122789289 5272 Eudicot View MSA
122041858 5273 Angiosperm View MSA
121345817 5274 Embryophyte View MSA
123425736 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.295 0.0 60.0421    
cufflinks 17.2801 0.0 57.5323    
cufflinks 31.1335 0.0 95.51   High
cufflinks 11.4714 0.0 41.8594    
cufflinks 13.0589 0.0 46.5102    
cufflinks 12.9623 0.0 45.7784    
cufflinks 6.92464 0.0 23.2551   Low
cufflinks 8.30167 0.0 31.9245    
cufflinks 6.98699 0.0 23.4623   Low
cufflinks 13.5214 0.0 47.5321    
cufflinks 13.0085 0.0 46.2312    

0 Strain