Gene : Phvul.002G180100 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1781
Name:  ? Phvul.002G180100 Secondary Identifier:  ? PAC:37178727
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G180100 0.5kb upstream 0.5kb upstream 3020 true Chr02: 33943416-33946435 Phaseolus vulgaris
Phvul.002G180100 0.5kb upstream 0.5kb upstream 500 false Chr02: 33945936-33946435 Phaseolus vulgaris
Phvul.002G180100 0.5kb downstream 0.5kb downstream 3020 true Chr02: 33942916-33945935 Phaseolus vulgaris
Phvul.002G180100 0.5kb downstream 0.5kb downstream 500 false Chr02: 33942916-33943415 Phaseolus vulgaris
Phvul.002G180100 1.0kb upstream 1.0kb upstream 3520 true Chr02: 33943416-33946935 Phaseolus vulgaris
Phvul.002G180100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33945936-33946935 Phaseolus vulgaris
Phvul.002G180100 1.0kb downstream 1.0kb downstream 3520 true Chr02: 33942416-33945935 Phaseolus vulgaris
Phvul.002G180100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33942416-33943415 Phaseolus vulgaris
Phvul.002G180100 2.0kb upstream 2.0kb upstream 4520 true Chr02: 33943416-33947935 Phaseolus vulgaris
Phvul.002G180100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33945936-33947935 Phaseolus vulgaris
Phvul.002G180100 2.0kb downstream 2.0kb downstream 4520 true Chr02: 33941416-33945935 Phaseolus vulgaris
Phvul.002G180100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33941416-33943415 Phaseolus vulgaris
Phvul.002G180100 5.0kb upstream 5.0kb upstream 7520 true Chr02: 33943416-33950935 Phaseolus vulgaris
Phvul.002G180100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33945936-33950935 Phaseolus vulgaris
Phvul.002G180100 5.0kb downstream 5.0kb downstream 7520 true Chr02: 33938416-33945935 Phaseolus vulgaris
Phvul.002G180100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33938416-33943415 Phaseolus vulgaris
Phvul.002G180100 10.0kb upstream 10.0kb upstream 12520 true Chr02: 33943416-33955935 Phaseolus vulgaris
Phvul.002G180100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33945936-33955935 Phaseolus vulgaris
Phvul.002G180100 10.0kb downstream 10.0kb downstream 12520 true Chr02: 33933416-33945935 Phaseolus vulgaris
Phvul.002G180100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33933416-33943415 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304903 5265 Fabidae View MSA
124067388 5270 Rosid View MSA
123740629 5271 Pentapetalae View MSA
122786381 5272 Eudicot View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.24297 0.0 19.0442   Low
cufflinks 18.8419 0.0 48.9163   High
cufflinks 7.79168 0.0 20.4497   Low
cufflinks 15.0519 0.0 38.9118    
cufflinks 12.397 0.0 32.0575    
cufflinks 8.29711 0.0 21.6934   Low
cufflinks 9.18993 0.0 23.8762    
cufflinks 12.7067 0.0 32.8484    
cufflinks 11.6866 0.0 30.2378    
cufflinks 14.2892 0.0 36.9357    
cufflinks 13.1999 0.0 34.1205    

0 Strain