Gene : Phvul.002G180300 P. vulgaris v2.1
Defline:  (1 of 3) 1.1.3.15 - (S)-2-hydroxy-acid oxidase / Hydroxy-acid oxidase B Genomic Order:  1783
Name:  ? Phvul.002G180300 Secondary Identifier:  ? PAC:37177500
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G180300 0.5kb upstream 0.5kb upstream 8507 true Chr02: 33972896-33981402 Phaseolus vulgaris
Phvul.002G180300 0.5kb upstream 0.5kb upstream 500 false Chr02: 33980903-33981402 Phaseolus vulgaris
Phvul.002G180300 0.5kb downstream 0.5kb downstream 8507 true Chr02: 33972396-33980902 Phaseolus vulgaris
Phvul.002G180300 0.5kb downstream 0.5kb downstream 500 false Chr02: 33972396-33972895 Phaseolus vulgaris
Phvul.002G180300 1.0kb upstream 1.0kb upstream 9007 true Chr02: 33972896-33981902 Phaseolus vulgaris
Phvul.002G180300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33980903-33981902 Phaseolus vulgaris
Phvul.002G180300 1.0kb downstream 1.0kb downstream 9007 true Chr02: 33971896-33980902 Phaseolus vulgaris
Phvul.002G180300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33971896-33972895 Phaseolus vulgaris
Phvul.002G180300 2.0kb upstream 2.0kb upstream 10007 true Chr02: 33972896-33982902 Phaseolus vulgaris
Phvul.002G180300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33980903-33982902 Phaseolus vulgaris
Phvul.002G180300 2.0kb downstream 2.0kb downstream 10007 true Chr02: 33970896-33980902 Phaseolus vulgaris
Phvul.002G180300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33970896-33972895 Phaseolus vulgaris
Phvul.002G180300 5.0kb upstream 5.0kb upstream 13007 true Chr02: 33972896-33985902 Phaseolus vulgaris
Phvul.002G180300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33980903-33985902 Phaseolus vulgaris
Phvul.002G180300 5.0kb downstream 5.0kb downstream 13007 true Chr02: 33967896-33980902 Phaseolus vulgaris
Phvul.002G180300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33967896-33972895 Phaseolus vulgaris
Phvul.002G180300 10.0kb upstream 10.0kb upstream 18007 true Chr02: 33972896-33990902 Phaseolus vulgaris
Phvul.002G180300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33980903-33990902 Phaseolus vulgaris
Phvul.002G180300 10.0kb downstream 10.0kb downstream 18007 true Chr02: 33962896-33980902 Phaseolus vulgaris
Phvul.002G180300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33962896-33972895 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314428 5265 Fabidae View MSA
124071344 5270 Rosid View MSA
123746733 5271 Pentapetalae View MSA
122791103 5272 Eudicot View MSA
122046790 5273 Angiosperm View MSA
121345614 5274 Embryophyte View MSA
123426843 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.1391 0.0 45.0645    
cufflinks 15.5146 0.0 40.9959    
cufflinks 2.55213 0.0 8.05033   Low
cufflinks 14.7786 0.0 39.3607    
cufflinks 17.5224 0.0 46.1037    
cufflinks 4.21061 0.0 12.5462   Low
cufflinks 19.3131 0.0 50.4656    
cufflinks 16.9857 0.0 44.5904    
cufflinks 17.9475 0.0 47.0921    
cufflinks 23.7697 0.0 61.6467    
cufflinks 23.3795 0.0 60.7094    

0 Strain