Gene : Phvul.002G180400 P. vulgaris v2.1
Defline:  (1 of 1) 2.6.1.13 - Ornithine aminotransferase / Ornithine--oxo-acid transaminase Genomic Order:  1784
Name:  ? Phvul.002G180400 Secondary Identifier:  ? PAC:37177696
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARGASEDEG-PWY Phaseolus vulgaris pathologic  
Pvulgaris ARGININE-SYN4-PWY Phaseolus vulgaris pathologic  
Pvulgaris ARG-PRO-PWY Phaseolus vulgaris pathologic  
Pvulgaris CITRULBIO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3341 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6922 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G180400 0.5kb upstream 0.5kb upstream 16445 true Chr02: 33983201-33999645 Phaseolus vulgaris
Phvul.002G180400 0.5kb upstream 0.5kb upstream 500 false Chr02: 33999146-33999645 Phaseolus vulgaris
Phvul.002G180400 0.5kb downstream 0.5kb downstream 16445 true Chr02: 33982701-33999145 Phaseolus vulgaris
Phvul.002G180400 0.5kb downstream 0.5kb downstream 500 false Chr02: 33982701-33983200 Phaseolus vulgaris
Phvul.002G180400 1.0kb upstream 1.0kb upstream 16945 true Chr02: 33983201-34000145 Phaseolus vulgaris
Phvul.002G180400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33999146-34000145 Phaseolus vulgaris
Phvul.002G180400 1.0kb downstream 1.0kb downstream 16945 true Chr02: 33982201-33999145 Phaseolus vulgaris
Phvul.002G180400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33982201-33983200 Phaseolus vulgaris
Phvul.002G180400 2.0kb upstream 2.0kb upstream 17945 true Chr02: 33983201-34001145 Phaseolus vulgaris
Phvul.002G180400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33999146-34001145 Phaseolus vulgaris
Phvul.002G180400 2.0kb downstream 2.0kb downstream 17945 true Chr02: 33981201-33999145 Phaseolus vulgaris
Phvul.002G180400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33981201-33983200 Phaseolus vulgaris
Phvul.002G180400 5.0kb upstream 5.0kb upstream 20945 true Chr02: 33983201-34004145 Phaseolus vulgaris
Phvul.002G180400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33999146-34004145 Phaseolus vulgaris
Phvul.002G180400 5.0kb downstream 5.0kb downstream 20945 true Chr02: 33978201-33999145 Phaseolus vulgaris
Phvul.002G180400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33978201-33983200 Phaseolus vulgaris
Phvul.002G180400 10.0kb upstream 10.0kb upstream 25945 true Chr02: 33983201-34009145 Phaseolus vulgaris
Phvul.002G180400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33999146-34009145 Phaseolus vulgaris
Phvul.002G180400 10.0kb downstream 10.0kb downstream 25945 true Chr02: 33973201-33999145 Phaseolus vulgaris
Phvul.002G180400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33973201-33983200 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308763 5265 Fabidae View MSA
124066510 5270 Rosid View MSA
123747705 5271 Pentapetalae View MSA
122789437 5272 Eudicot View MSA
122044834 5273 Angiosperm View MSA
121345718 5274 Embryophyte View MSA
123423939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.4232 0.0 65.7142   High
cufflinks 24.3318 0.0 62.9039    
cufflinks 5.48126 0.0 15.5268   Low
cufflinks 17.9733 0.0 46.9077    
cufflinks 10.4615 0.0 28.2335    
cufflinks 6.34424 0.0 17.7632   Low
cufflinks 12.3301 0.0 32.6683    
cufflinks 10.2823 0.0 27.517    
cufflinks 12.1448 0.0 32.2732    
cufflinks 38.7204 0.0 100.785 High High
cufflinks 13.4562 0.0 35.5751    

0 Strain