Gene : Phvul.002G161500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12608:SF6 - GDT1-LIKE PROTEIN 1, CHLOROPLASTIC Genomic Order:  1618
Name:  ? Phvul.002G161500 Secondary Identifier:  ? PAC:37176218
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G161500 0.5kb upstream 0.5kb upstream 5320 true Chr02: 31623539-31628858 Phaseolus vulgaris
Phvul.002G161500 0.5kb upstream 0.5kb upstream 500 false Chr02: 31628359-31628858 Phaseolus vulgaris
Phvul.002G161500 0.5kb downstream 0.5kb downstream 5320 true Chr02: 31623039-31628358 Phaseolus vulgaris
Phvul.002G161500 0.5kb downstream 0.5kb downstream 500 false Chr02: 31623039-31623538 Phaseolus vulgaris
Phvul.002G161500 1.0kb upstream 1.0kb upstream 5820 true Chr02: 31623539-31629358 Phaseolus vulgaris
Phvul.002G161500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 31628359-31629358 Phaseolus vulgaris
Phvul.002G161500 1.0kb downstream 1.0kb downstream 5820 true Chr02: 31622539-31628358 Phaseolus vulgaris
Phvul.002G161500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 31622539-31623538 Phaseolus vulgaris
Phvul.002G161500 2.0kb upstream 2.0kb upstream 6820 true Chr02: 31623539-31630358 Phaseolus vulgaris
Phvul.002G161500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 31628359-31630358 Phaseolus vulgaris
Phvul.002G161500 2.0kb downstream 2.0kb downstream 6820 true Chr02: 31621539-31628358 Phaseolus vulgaris
Phvul.002G161500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 31621539-31623538 Phaseolus vulgaris
Phvul.002G161500 5.0kb upstream 5.0kb upstream 9820 true Chr02: 31623539-31633358 Phaseolus vulgaris
Phvul.002G161500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 31628359-31633358 Phaseolus vulgaris
Phvul.002G161500 5.0kb downstream 5.0kb downstream 9820 true Chr02: 31618539-31628358 Phaseolus vulgaris
Phvul.002G161500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 31618539-31623538 Phaseolus vulgaris
Phvul.002G161500 10.0kb upstream 10.0kb upstream 14820 true Chr02: 31623539-31638358 Phaseolus vulgaris
Phvul.002G161500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 31628359-31638358 Phaseolus vulgaris
Phvul.002G161500 10.0kb downstream 10.0kb downstream 14820 true Chr02: 31613539-31628358 Phaseolus vulgaris
Phvul.002G161500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 31613539-31623538 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311706 5265 Fabidae View MSA
124063864 5270 Rosid View MSA
123737377 5271 Pentapetalae View MSA
122788371 5272 Eudicot View MSA
122045430 5273 Angiosperm View MSA
121344510 5274 Embryophyte View MSA
123428056 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.73875 0.0 19.2484    
cufflinks 7.49925 0.0 21.314    
cufflinks 70.6574 0.0 186.851 High High
cufflinks 5.80624 0.0 16.9483    
cufflinks 5.45298 0.0 16.0743    
cufflinks 33.3617 0.0 86.2534 High High
cufflinks 0.61145 0.0 2.27576   Low
cufflinks 1.01814 0.0 3.61245    
cufflinks 0.361783 0.0 1.40961 Low Low
cufflinks 4.69021 0.0 14.0249    
cufflinks 4.38117 0.0 13.2559    

0 Strain