Gene : Phvul.002G166700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED Genomic Order:  1669
Name:  ? Phvul.002G166700 Secondary Identifier:  ? PAC:37177105
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G166700 0.5kb upstream 0.5kb upstream 3332 true Chr02: 32186666-32189997 Phaseolus vulgaris
Phvul.002G166700 0.5kb upstream 0.5kb upstream 500 false Chr02: 32186666-32187165 Phaseolus vulgaris
Phvul.002G166700 0.5kb downstream 0.5kb downstream 3332 true Chr02: 32187166-32190497 Phaseolus vulgaris
Phvul.002G166700 0.5kb downstream 0.5kb downstream 500 false Chr02: 32189998-32190497 Phaseolus vulgaris
Phvul.002G166700 1.0kb upstream 1.0kb upstream 3832 true Chr02: 32186166-32189997 Phaseolus vulgaris
Phvul.002G166700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 32186166-32187165 Phaseolus vulgaris
Phvul.002G166700 1.0kb downstream 1.0kb downstream 3832 true Chr02: 32187166-32190997 Phaseolus vulgaris
Phvul.002G166700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 32189998-32190997 Phaseolus vulgaris
Phvul.002G166700 2.0kb upstream 2.0kb upstream 4832 true Chr02: 32185166-32189997 Phaseolus vulgaris
Phvul.002G166700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 32185166-32187165 Phaseolus vulgaris
Phvul.002G166700 2.0kb downstream 2.0kb downstream 4832 true Chr02: 32187166-32191997 Phaseolus vulgaris
Phvul.002G166700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 32189998-32191997 Phaseolus vulgaris
Phvul.002G166700 5.0kb upstream 5.0kb upstream 7832 true Chr02: 32182166-32189997 Phaseolus vulgaris
Phvul.002G166700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 32182166-32187165 Phaseolus vulgaris
Phvul.002G166700 5.0kb downstream 5.0kb downstream 7832 true Chr02: 32187166-32194997 Phaseolus vulgaris
Phvul.002G166700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 32189998-32194997 Phaseolus vulgaris
Phvul.002G166700 10.0kb upstream 10.0kb upstream 12832 true Chr02: 32177166-32189997 Phaseolus vulgaris
Phvul.002G166700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 32177166-32187165 Phaseolus vulgaris
Phvul.002G166700 10.0kb downstream 10.0kb downstream 12832 true Chr02: 32187166-32199997 Phaseolus vulgaris
Phvul.002G166700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 32189998-32199997 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311985 5265 Fabidae View MSA
124067577 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.99229 0.0 8.85114    
cufflinks 4.18535 0.0 11.9381    
cufflinks 0.492628 0.0 1.779 Low Low
cufflinks 2.82555 0.0 8.42455    
cufflinks 2.32973 0.0 7.11575    
cufflinks 1.38999 0.0 4.48286    
cufflinks 3.80215 0.0 10.8779    
cufflinks 8.41579 0.0 22.465   High
cufflinks 1.59931 0.0 5.05886    
cufflinks 1.42645 0.0 4.60037    
cufflinks 4.36524 0.0 12.41    

0 Strain