Gene : Phvul.002G168400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11468//PTHR11468:SF14 - GLYCOGEN PHOSPHORYLASE // SUBFAMILY NOT NAMED Genomic Order:  1686
Name:  ? Phvul.002G168400 Secondary Identifier:  ? PAC:37176843
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7238 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G168400 0.5kb upstream 0.5kb upstream 9528 true Chr02: 32388573-32398100 Phaseolus vulgaris
Phvul.002G168400 0.5kb upstream 0.5kb upstream 500 false Chr02: 32388573-32389072 Phaseolus vulgaris
Phvul.002G168400 0.5kb downstream 0.5kb downstream 9528 true Chr02: 32389073-32398600 Phaseolus vulgaris
Phvul.002G168400 0.5kb downstream 0.5kb downstream 500 false Chr02: 32398101-32398600 Phaseolus vulgaris
Phvul.002G168400 1.0kb upstream 1.0kb upstream 10028 true Chr02: 32388073-32398100 Phaseolus vulgaris
Phvul.002G168400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 32388073-32389072 Phaseolus vulgaris
Phvul.002G168400 1.0kb downstream 1.0kb downstream 10028 true Chr02: 32389073-32399100 Phaseolus vulgaris
Phvul.002G168400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 32398101-32399100 Phaseolus vulgaris
Phvul.002G168400 2.0kb upstream 2.0kb upstream 11028 true Chr02: 32387073-32398100 Phaseolus vulgaris
Phvul.002G168400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 32387073-32389072 Phaseolus vulgaris
Phvul.002G168400 2.0kb downstream 2.0kb downstream 11028 true Chr02: 32389073-32400100 Phaseolus vulgaris
Phvul.002G168400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 32398101-32400100 Phaseolus vulgaris
Phvul.002G168400 5.0kb upstream 5.0kb upstream 14028 true Chr02: 32384073-32398100 Phaseolus vulgaris
Phvul.002G168400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 32384073-32389072 Phaseolus vulgaris
Phvul.002G168400 5.0kb downstream 5.0kb downstream 14028 true Chr02: 32389073-32403100 Phaseolus vulgaris
Phvul.002G168400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 32398101-32403100 Phaseolus vulgaris
Phvul.002G168400 10.0kb upstream 10.0kb upstream 19028 true Chr02: 32379073-32398100 Phaseolus vulgaris
Phvul.002G168400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 32379073-32389072 Phaseolus vulgaris
Phvul.002G168400 10.0kb downstream 10.0kb downstream 19028 true Chr02: 32389073-32408100 Phaseolus vulgaris
Phvul.002G168400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 32398101-32408100 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308252 5265 Fabidae View MSA
124071447 5270 Rosid View MSA
123744201 5271 Pentapetalae View MSA
122788131 5272 Eudicot View MSA
122045780 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.733568 0.0 3.55768    
cufflinks 6.64896 0.0 22.624    
cufflinks 13.9366 0.0 44.6958   High
cufflinks 1.04628 0.0 4.70351    
cufflinks 2.63822 0.0 9.50568    
cufflinks 15.8659 0.0 51.4612   High
cufflinks 0.636192 0.0 3.21715    
cufflinks 2.78766 0.0 9.54648    
cufflinks 0.251281 0.0 1.57434 Low Low
cufflinks 4.06676 0.0 13.5415    
cufflinks 1.65339 0.0 6.79201    

0 Strain