Gene : Phvul.002G152600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12357:SF32 - YTH FAMILY PROTEIN Genomic Order:  1530
Name:  ? Phvul.002G152600 Secondary Identifier:  ? PAC:37178315
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G152600 0.5kb upstream 0.5kb upstream 4438 true Chr02: 30618510-30622947 Phaseolus vulgaris
Phvul.002G152600 0.5kb upstream 0.5kb upstream 500 false Chr02: 30622448-30622947 Phaseolus vulgaris
Phvul.002G152600 0.5kb downstream 0.5kb downstream 4438 true Chr02: 30618010-30622447 Phaseolus vulgaris
Phvul.002G152600 0.5kb downstream 0.5kb downstream 500 false Chr02: 30618010-30618509 Phaseolus vulgaris
Phvul.002G152600 1.0kb upstream 1.0kb upstream 4938 true Chr02: 30618510-30623447 Phaseolus vulgaris
Phvul.002G152600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 30622448-30623447 Phaseolus vulgaris
Phvul.002G152600 1.0kb downstream 1.0kb downstream 4938 true Chr02: 30617510-30622447 Phaseolus vulgaris
Phvul.002G152600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 30617510-30618509 Phaseolus vulgaris
Phvul.002G152600 2.0kb upstream 2.0kb upstream 5938 true Chr02: 30618510-30624447 Phaseolus vulgaris
Phvul.002G152600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 30622448-30624447 Phaseolus vulgaris
Phvul.002G152600 2.0kb downstream 2.0kb downstream 5938 true Chr02: 30616510-30622447 Phaseolus vulgaris
Phvul.002G152600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 30616510-30618509 Phaseolus vulgaris
Phvul.002G152600 5.0kb upstream 5.0kb upstream 8938 true Chr02: 30618510-30627447 Phaseolus vulgaris
Phvul.002G152600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 30622448-30627447 Phaseolus vulgaris
Phvul.002G152600 5.0kb downstream 5.0kb downstream 8938 true Chr02: 30613510-30622447 Phaseolus vulgaris
Phvul.002G152600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 30613510-30618509 Phaseolus vulgaris
Phvul.002G152600 10.0kb upstream 10.0kb upstream 13938 true Chr02: 30618510-30632447 Phaseolus vulgaris
Phvul.002G152600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 30622448-30632447 Phaseolus vulgaris
Phvul.002G152600 10.0kb downstream 10.0kb downstream 13938 true Chr02: 30608510-30622447 Phaseolus vulgaris
Phvul.002G152600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 30608510-30618509 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305122 5265 Fabidae View MSA
124062891 5270 Rosid View MSA
123739575 5271 Pentapetalae View MSA
122769957 5272 Eudicot View MSA
122045860 5273 Angiosperm View MSA
121348539 5274 Embryophyte View MSA
123380904 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.02083 0.0 27.7403    
cufflinks 4.50562 0.0 29.3154    
cufflinks 15.2752 0.0 85.9897   High
cufflinks 3.37914 0.0 20.4952    
cufflinks 3.97903 0.0 29.1964    
cufflinks 11.2254 0.0 62.4103   High
cufflinks 1.84894 0.0 15.3875    
cufflinks 2.14161 0.0 15.6834    
cufflinks 1.0651 0.0 10.5938   Low
cufflinks 6.14745 0.0 36.29    
cufflinks 2.88736 0.0 19.3163    

0 Strain