Gene : Phvul.002G155200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11145 - TUMOR NECROSIS FACTOR-RELATED Genomic Order:  1556
Name:  ? Phvul.002G155200 Secondary Identifier:  ? PAC:37174540
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G155200 0.5kb upstream 0.5kb upstream 2266 true Chr02: 30951044-30953309 Phaseolus vulgaris
Phvul.002G155200 0.5kb upstream 0.5kb upstream 500 false Chr02: 30952810-30953309 Phaseolus vulgaris
Phvul.002G155200 0.5kb downstream 0.5kb downstream 2266 true Chr02: 30950544-30952809 Phaseolus vulgaris
Phvul.002G155200 0.5kb downstream 0.5kb downstream 500 false Chr02: 30950544-30951043 Phaseolus vulgaris
Phvul.002G155200 1.0kb upstream 1.0kb upstream 2766 true Chr02: 30951044-30953809 Phaseolus vulgaris
Phvul.002G155200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 30952810-30953809 Phaseolus vulgaris
Phvul.002G155200 1.0kb downstream 1.0kb downstream 2766 true Chr02: 30950044-30952809 Phaseolus vulgaris
Phvul.002G155200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 30950044-30951043 Phaseolus vulgaris
Phvul.002G155200 2.0kb upstream 2.0kb upstream 3766 true Chr02: 30951044-30954809 Phaseolus vulgaris
Phvul.002G155200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 30952810-30954809 Phaseolus vulgaris
Phvul.002G155200 2.0kb downstream 2.0kb downstream 3766 true Chr02: 30949044-30952809 Phaseolus vulgaris
Phvul.002G155200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 30949044-30951043 Phaseolus vulgaris
Phvul.002G155200 5.0kb upstream 5.0kb upstream 6766 true Chr02: 30951044-30957809 Phaseolus vulgaris
Phvul.002G155200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 30952810-30957809 Phaseolus vulgaris
Phvul.002G155200 5.0kb downstream 5.0kb downstream 6766 true Chr02: 30946044-30952809 Phaseolus vulgaris
Phvul.002G155200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 30946044-30951043 Phaseolus vulgaris
Phvul.002G155200 10.0kb upstream 10.0kb upstream 11766 true Chr02: 30951044-30962809 Phaseolus vulgaris
Phvul.002G155200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 30952810-30962809 Phaseolus vulgaris
Phvul.002G155200 10.0kb downstream 10.0kb downstream 11766 true Chr02: 30941044-30952809 Phaseolus vulgaris
Phvul.002G155200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 30941044-30951043 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304372 5265 Fabidae View MSA
124065246 5270 Rosid View MSA
123739700 5271 Pentapetalae View MSA
122793566 5272 Eudicot View MSA
122045372 5273 Angiosperm View MSA
121348328 5274 Embryophyte View MSA
123380822 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.6043 0.0 45.5096    
cufflinks 14.5725 0.0 37.7962    
cufflinks 7.8128 0.0 21.0589   Low
cufflinks 24.1944 0.0 62.6944   High
cufflinks 13.103 0.0 34.032    
cufflinks 9.50228 0.0 25.1537   Low
cufflinks 14.3009 0.0 37.0447    
cufflinks 12.0092 0.0 31.3449    
cufflinks 17.9333 0.0 46.3583    
cufflinks 17.7943 0.0 46.0027    
cufflinks 15.0225 0.0 38.8881    

0 Strain