Gene : Phvul.002G156800 P. vulgaris v2.1
Defline:  (1 of 6) K17686 - Cu+-exporting ATPase (copA, ATP7) Genomic Order:  1572
Name:  ? Phvul.002G156800 Secondary Identifier:  ? PAC:37176333
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G156800 0.5kb upstream 0.5kb upstream 4824 true Chr02: 31138381-31143204 Phaseolus vulgaris
Phvul.002G156800 0.5kb upstream 0.5kb upstream 500 false Chr02: 31138381-31138880 Phaseolus vulgaris
Phvul.002G156800 0.5kb downstream 0.5kb downstream 4824 true Chr02: 31138881-31143704 Phaseolus vulgaris
Phvul.002G156800 0.5kb downstream 0.5kb downstream 500 false Chr02: 31143205-31143704 Phaseolus vulgaris
Phvul.002G156800 1.0kb upstream 1.0kb upstream 5324 true Chr02: 31137881-31143204 Phaseolus vulgaris
Phvul.002G156800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 31137881-31138880 Phaseolus vulgaris
Phvul.002G156800 1.0kb downstream 1.0kb downstream 5324 true Chr02: 31138881-31144204 Phaseolus vulgaris
Phvul.002G156800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 31143205-31144204 Phaseolus vulgaris
Phvul.002G156800 2.0kb upstream 2.0kb upstream 6324 true Chr02: 31136881-31143204 Phaseolus vulgaris
Phvul.002G156800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 31136881-31138880 Phaseolus vulgaris
Phvul.002G156800 2.0kb downstream 2.0kb downstream 6324 true Chr02: 31138881-31145204 Phaseolus vulgaris
Phvul.002G156800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 31143205-31145204 Phaseolus vulgaris
Phvul.002G156800 5.0kb upstream 5.0kb upstream 9324 true Chr02: 31133881-31143204 Phaseolus vulgaris
Phvul.002G156800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 31133881-31138880 Phaseolus vulgaris
Phvul.002G156800 5.0kb downstream 5.0kb downstream 9324 true Chr02: 31138881-31148204 Phaseolus vulgaris
Phvul.002G156800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 31143205-31148204 Phaseolus vulgaris
Phvul.002G156800 10.0kb upstream 10.0kb upstream 14324 true Chr02: 31128881-31143204 Phaseolus vulgaris
Phvul.002G156800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 31128881-31138880 Phaseolus vulgaris
Phvul.002G156800 10.0kb downstream 10.0kb downstream 14324 true Chr02: 31138881-31153204 Phaseolus vulgaris
Phvul.002G156800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 31143205-31153204 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308633 5265 Fabidae View MSA
124069663 5270 Rosid View MSA
123747003 5271 Pentapetalae View MSA
122794490 5272 Eudicot View MSA
122042760 5273 Angiosperm View MSA
121351146 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.41674 0.0 16.7996    
cufflinks 6.48871 0.0 17.0046    
cufflinks 2.42251 0.0 6.88998   Low
cufflinks 3.344 0.0 9.22058   Low
cufflinks 9.73305 0.0 25.1846    
cufflinks 3.3252 0.0 9.16001   Low
cufflinks 20.9533 0.0 55.2798   High
cufflinks 6.99487 0.0 18.2518    
cufflinks 23.195 0.0 61.5174   High
cufflinks 15.0366 0.0 39.016    
cufflinks 12.2249 0.0 31.6095    

0 Strain