Gene : Phvul.002G159000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11850//PTHR11850:SF66 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Genomic Order:  1594
Name:  ? Phvul.002G159000 Secondary Identifier:  ? PAC:37175903
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G159000 0.5kb upstream 0.5kb upstream 5228 true Chr02: 31374398-31379625 Phaseolus vulgaris
Phvul.002G159000 0.5kb upstream 0.5kb upstream 500 false Chr02: 31374398-31374897 Phaseolus vulgaris
Phvul.002G159000 0.5kb downstream 0.5kb downstream 5228 true Chr02: 31374898-31380125 Phaseolus vulgaris
Phvul.002G159000 0.5kb downstream 0.5kb downstream 500 false Chr02: 31379626-31380125 Phaseolus vulgaris
Phvul.002G159000 1.0kb upstream 1.0kb upstream 5728 true Chr02: 31373898-31379625 Phaseolus vulgaris
Phvul.002G159000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 31373898-31374897 Phaseolus vulgaris
Phvul.002G159000 1.0kb downstream 1.0kb downstream 5728 true Chr02: 31374898-31380625 Phaseolus vulgaris
Phvul.002G159000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 31379626-31380625 Phaseolus vulgaris
Phvul.002G159000 2.0kb upstream 2.0kb upstream 6728 true Chr02: 31372898-31379625 Phaseolus vulgaris
Phvul.002G159000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 31372898-31374897 Phaseolus vulgaris
Phvul.002G159000 2.0kb downstream 2.0kb downstream 6728 true Chr02: 31374898-31381625 Phaseolus vulgaris
Phvul.002G159000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 31379626-31381625 Phaseolus vulgaris
Phvul.002G159000 5.0kb upstream 5.0kb upstream 9728 true Chr02: 31369898-31379625 Phaseolus vulgaris
Phvul.002G159000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 31369898-31374897 Phaseolus vulgaris
Phvul.002G159000 5.0kb downstream 5.0kb downstream 9728 true Chr02: 31374898-31384625 Phaseolus vulgaris
Phvul.002G159000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 31379626-31384625 Phaseolus vulgaris
Phvul.002G159000 10.0kb upstream 10.0kb upstream 14728 true Chr02: 31364898-31379625 Phaseolus vulgaris
Phvul.002G159000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 31364898-31374897 Phaseolus vulgaris
Phvul.002G159000 10.0kb downstream 10.0kb downstream 14728 true Chr02: 31374898-31389625 Phaseolus vulgaris
Phvul.002G159000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 31379626-31389625 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308400 5265 Fabidae View MSA
124068051 5270 Rosid View MSA
123740482 5271 Pentapetalae View MSA
122791610 5272 Eudicot View MSA
122049932 5273 Angiosperm View MSA
121350603 5274 Embryophyte View MSA
123426094 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.73156 0.0 5.14286   Low
cufflinks 4.15411 0.0 11.3261    
cufflinks 35.2813 0.0 95.9476   High
cufflinks 0.656189 0.0 2.1836   Low
cufflinks 5.69434 0.0 15.1866    
cufflinks 8.45695 0.0 22.001    
cufflinks 21.871 0.0 57.5469    
cufflinks 27.8105 0.0 74.427   High
cufflinks 7.68162 0.0 20.0212    
cufflinks 28.8526 0.0 77.0052   High
cufflinks 4.85277 0.0 13.0811    

0 Strain