Gene : Phvul.002G159900 P. vulgaris v2.1
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  1603
Name:  ? Phvul.002G159900 Secondary Identifier:  ? PAC:37176506
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G159900 0.5kb upstream 0.5kb upstream 2851 true Chr02: 31475573-31478423 Phaseolus vulgaris
Phvul.002G159900 0.5kb upstream 0.5kb upstream 500 false Chr02: 31477924-31478423 Phaseolus vulgaris
Phvul.002G159900 0.5kb downstream 0.5kb downstream 2851 true Chr02: 31475073-31477923 Phaseolus vulgaris
Phvul.002G159900 0.5kb downstream 0.5kb downstream 500 false Chr02: 31475073-31475572 Phaseolus vulgaris
Phvul.002G159900 1.0kb upstream 1.0kb upstream 3351 true Chr02: 31475573-31478923 Phaseolus vulgaris
Phvul.002G159900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 31477924-31478923 Phaseolus vulgaris
Phvul.002G159900 1.0kb downstream 1.0kb downstream 3351 true Chr02: 31474573-31477923 Phaseolus vulgaris
Phvul.002G159900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 31474573-31475572 Phaseolus vulgaris
Phvul.002G159900 2.0kb upstream 2.0kb upstream 4351 true Chr02: 31475573-31479923 Phaseolus vulgaris
Phvul.002G159900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 31477924-31479923 Phaseolus vulgaris
Phvul.002G159900 2.0kb downstream 2.0kb downstream 4351 true Chr02: 31473573-31477923 Phaseolus vulgaris
Phvul.002G159900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 31473573-31475572 Phaseolus vulgaris
Phvul.002G159900 5.0kb upstream 5.0kb upstream 7351 true Chr02: 31475573-31482923 Phaseolus vulgaris
Phvul.002G159900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 31477924-31482923 Phaseolus vulgaris
Phvul.002G159900 5.0kb downstream 5.0kb downstream 7351 true Chr02: 31470573-31477923 Phaseolus vulgaris
Phvul.002G159900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 31470573-31475572 Phaseolus vulgaris
Phvul.002G159900 10.0kb upstream 10.0kb upstream 12351 true Chr02: 31475573-31487923 Phaseolus vulgaris
Phvul.002G159900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 31477924-31487923 Phaseolus vulgaris
Phvul.002G159900 10.0kb downstream 10.0kb downstream 12351 true Chr02: 31465573-31477923 Phaseolus vulgaris
Phvul.002G159900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 31465573-31475572 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305262 5265 Fabidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.2211 0.0 145.42 High High
cufflinks 28.4181 0.0 74.6023    
cufflinks 86.4757 0.0 226.45 High High
cufflinks 58.881 0.0 152.377 High High
cufflinks 25.8979 0.0 68.4194    
cufflinks 30.0763 0.0 78.7206    
cufflinks 17.9618 0.0 48.6022   Low
cufflinks 19.0665 0.0 51.2655   Low
cufflinks 36.1945 0.0 94.0079 High  
cufflinks 36.1934 0.0 94.0376 High  
cufflinks 20.4535 0.0 55.0115    

0 Strain