Gene : Phvul.002G149500 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  1499
Name:  ? Phvul.002G149500 Secondary Identifier:  ? PAC:37174663
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G149500 0.5kb upstream 0.5kb upstream 2018 true Chr02: 30216146-30218163 Phaseolus vulgaris
Phvul.002G149500 0.5kb upstream 0.5kb upstream 500 false Chr02: 30216146-30216645 Phaseolus vulgaris
Phvul.002G149500 0.5kb downstream 0.5kb downstream 2018 true Chr02: 30216646-30218663 Phaseolus vulgaris
Phvul.002G149500 0.5kb downstream 0.5kb downstream 500 false Chr02: 30218164-30218663 Phaseolus vulgaris
Phvul.002G149500 1.0kb upstream 1.0kb upstream 2518 true Chr02: 30215646-30218163 Phaseolus vulgaris
Phvul.002G149500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 30215646-30216645 Phaseolus vulgaris
Phvul.002G149500 1.0kb downstream 1.0kb downstream 2518 true Chr02: 30216646-30219163 Phaseolus vulgaris
Phvul.002G149500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 30218164-30219163 Phaseolus vulgaris
Phvul.002G149500 2.0kb upstream 2.0kb upstream 3518 true Chr02: 30214646-30218163 Phaseolus vulgaris
Phvul.002G149500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 30214646-30216645 Phaseolus vulgaris
Phvul.002G149500 2.0kb downstream 2.0kb downstream 3518 true Chr02: 30216646-30220163 Phaseolus vulgaris
Phvul.002G149500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 30218164-30220163 Phaseolus vulgaris
Phvul.002G149500 5.0kb upstream 5.0kb upstream 6518 true Chr02: 30211646-30218163 Phaseolus vulgaris
Phvul.002G149500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 30211646-30216645 Phaseolus vulgaris
Phvul.002G149500 5.0kb downstream 5.0kb downstream 6518 true Chr02: 30216646-30223163 Phaseolus vulgaris
Phvul.002G149500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 30218164-30223163 Phaseolus vulgaris
Phvul.002G149500 10.0kb upstream 10.0kb upstream 11518 true Chr02: 30206646-30218163 Phaseolus vulgaris
Phvul.002G149500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 30206646-30216645 Phaseolus vulgaris
Phvul.002G149500 10.0kb downstream 10.0kb downstream 11518 true Chr02: 30216646-30228163 Phaseolus vulgaris
Phvul.002G149500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 30218164-30228163 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310690 5265 Fabidae View MSA
124069333 5270 Rosid View MSA
123742197 5271 Pentapetalae View MSA
122797344 5272 Eudicot View MSA
122048706 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.00634 0.0 9.49726   High
cufflinks 0.336659 0.0 1.32045 Low  
cufflinks 0.0484367 0.0 0.226233 Low Low
cufflinks 0.711532 0.0 2.61211    
cufflinks 0.843899 0.0 3.06172    
cufflinks 1.54163 0.0 5.28102    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.10294 0.0 3.90424    

0 Strain