Gene : Phvul.002G143500 P. vulgaris v2.1
Defline:  (1 of 1) K05752 - chromosome 3 open reading frame 10 (C3ORF10, HSPC300) Genomic Order:  1439
Name:  ? Phvul.002G143500 Secondary Identifier:  ? PAC:37177537
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G143500 0.5kb upstream 0.5kb upstream 1309 true Chr02: 29184720-29186028 Phaseolus vulgaris
Phvul.002G143500 0.5kb upstream 0.5kb upstream 500 false Chr02: 29185529-29186028 Phaseolus vulgaris
Phvul.002G143500 0.5kb downstream 0.5kb downstream 1309 true Chr02: 29184220-29185528 Phaseolus vulgaris
Phvul.002G143500 0.5kb downstream 0.5kb downstream 500 false Chr02: 29184220-29184719 Phaseolus vulgaris
Phvul.002G143500 1.0kb upstream 1.0kb upstream 1809 true Chr02: 29184720-29186528 Phaseolus vulgaris
Phvul.002G143500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 29185529-29186528 Phaseolus vulgaris
Phvul.002G143500 1.0kb downstream 1.0kb downstream 1809 true Chr02: 29183720-29185528 Phaseolus vulgaris
Phvul.002G143500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 29183720-29184719 Phaseolus vulgaris
Phvul.002G143500 2.0kb upstream 2.0kb upstream 2809 true Chr02: 29184720-29187528 Phaseolus vulgaris
Phvul.002G143500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 29185529-29187528 Phaseolus vulgaris
Phvul.002G143500 2.0kb downstream 2.0kb downstream 2809 true Chr02: 29182720-29185528 Phaseolus vulgaris
Phvul.002G143500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 29182720-29184719 Phaseolus vulgaris
Phvul.002G143500 5.0kb upstream 5.0kb upstream 5809 true Chr02: 29184720-29190528 Phaseolus vulgaris
Phvul.002G143500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 29185529-29190528 Phaseolus vulgaris
Phvul.002G143500 5.0kb downstream 5.0kb downstream 5809 true Chr02: 29179720-29185528 Phaseolus vulgaris
Phvul.002G143500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 29179720-29184719 Phaseolus vulgaris
Phvul.002G143500 10.0kb upstream 10.0kb upstream 10809 true Chr02: 29184720-29195528 Phaseolus vulgaris
Phvul.002G143500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 29185529-29195528 Phaseolus vulgaris
Phvul.002G143500 10.0kb downstream 10.0kb downstream 10809 true Chr02: 29174720-29185528 Phaseolus vulgaris
Phvul.002G143500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 29174720-29184719 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305006 5265 Fabidae View MSA
124051100 5270 Rosid View MSA
123747984 5271 Pentapetalae View MSA
122786023 5272 Eudicot View MSA
122047228 5273 Angiosperm View MSA
121347694 5274 Embryophyte View MSA
123380603 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.83726 0.0 21.6852    
cufflinks 6.64583 0.0 21.0552    
cufflinks 7.24695 0.0 22.8982    
cufflinks 12.1111 0.0 35.9116   High
cufflinks 11.1907 0.0 33.6943   High
cufflinks 7.55288 0.0 23.626    
cufflinks 4.20931 0.0 14.0351   Low
cufflinks 3.26004 0.0 11.2215   Low
cufflinks 4.57752 0.0 15.0765    
cufflinks 5.07441 0.0 16.6449    
cufflinks 14.9644 0.0 43.2459   High

0 Strain