Gene : Phvul.002G132500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31499:SF5 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  1327
Name:  ? Phvul.002G132500 Secondary Identifier:  ? PAC:37178858
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G132500 0.5kb upstream 0.5kb upstream 3301 true Chr02: 27634530-27637830 Phaseolus vulgaris
Phvul.002G132500 0.5kb upstream 0.5kb upstream 500 false Chr02: 27637331-27637830 Phaseolus vulgaris
Phvul.002G132500 0.5kb downstream 0.5kb downstream 3301 true Chr02: 27634030-27637330 Phaseolus vulgaris
Phvul.002G132500 0.5kb downstream 0.5kb downstream 500 false Chr02: 27634030-27634529 Phaseolus vulgaris
Phvul.002G132500 1.0kb upstream 1.0kb upstream 3801 true Chr02: 27634530-27638330 Phaseolus vulgaris
Phvul.002G132500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 27637331-27638330 Phaseolus vulgaris
Phvul.002G132500 1.0kb downstream 1.0kb downstream 3801 true Chr02: 27633530-27637330 Phaseolus vulgaris
Phvul.002G132500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 27633530-27634529 Phaseolus vulgaris
Phvul.002G132500 2.0kb upstream 2.0kb upstream 4801 true Chr02: 27634530-27639330 Phaseolus vulgaris
Phvul.002G132500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 27637331-27639330 Phaseolus vulgaris
Phvul.002G132500 2.0kb downstream 2.0kb downstream 4801 true Chr02: 27632530-27637330 Phaseolus vulgaris
Phvul.002G132500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 27632530-27634529 Phaseolus vulgaris
Phvul.002G132500 5.0kb upstream 5.0kb upstream 7801 true Chr02: 27634530-27642330 Phaseolus vulgaris
Phvul.002G132500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 27637331-27642330 Phaseolus vulgaris
Phvul.002G132500 5.0kb downstream 5.0kb downstream 7801 true Chr02: 27629530-27637330 Phaseolus vulgaris
Phvul.002G132500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 27629530-27634529 Phaseolus vulgaris
Phvul.002G132500 10.0kb upstream 10.0kb upstream 12801 true Chr02: 27634530-27647330 Phaseolus vulgaris
Phvul.002G132500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 27637331-27647330 Phaseolus vulgaris
Phvul.002G132500 10.0kb downstream 10.0kb downstream 12801 true Chr02: 27624530-27637330 Phaseolus vulgaris
Phvul.002G132500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 27624530-27634529 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307698 5265 Fabidae View MSA
124073439 5270 Rosid View MSA
123741048 5271 Pentapetalae View MSA
122787904 5272 Eudicot View MSA
122042666 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349639 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.87046 0.0 60.8743    
cufflinks 4.61239 0.0 48.7649    
cufflinks 1.81397 0.0 14.8324   Low
cufflinks 0.97605 0.0 7.9387   Low
cufflinks 6.89626 0.0 123.348    
cufflinks 2.16552 0.0 15.6188    
cufflinks 10.6898 0.0 67.9434    
cufflinks 38.1576 0.0 140.261 High High
cufflinks 5.29973 0.0 58.6919    
cufflinks 5.32696 0.0 468.279    
cufflinks 7.56721 0.0 185.085    

0 Strain