Gene : Phvul.002G134300 P. vulgaris v2.1
Defline:  (1 of 1) K12189 - ESCRT-II complex subunit VPS25 (VPS25, EAP20) Genomic Order:  1346
Name:  ? Phvul.002G134300 Secondary Identifier:  ? PAC:37174837
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G134300 0.5kb upstream 0.5kb upstream 4713 true Chr02: 27818287-27822999 Phaseolus vulgaris
Phvul.002G134300 0.5kb upstream 0.5kb upstream 500 false Chr02: 27818287-27818786 Phaseolus vulgaris
Phvul.002G134300 0.5kb downstream 0.5kb downstream 4713 true Chr02: 27818787-27823499 Phaseolus vulgaris
Phvul.002G134300 0.5kb downstream 0.5kb downstream 500 false Chr02: 27823000-27823499 Phaseolus vulgaris
Phvul.002G134300 1.0kb upstream 1.0kb upstream 5213 true Chr02: 27817787-27822999 Phaseolus vulgaris
Phvul.002G134300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 27817787-27818786 Phaseolus vulgaris
Phvul.002G134300 1.0kb downstream 1.0kb downstream 5213 true Chr02: 27818787-27823999 Phaseolus vulgaris
Phvul.002G134300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 27823000-27823999 Phaseolus vulgaris
Phvul.002G134300 2.0kb upstream 2.0kb upstream 6213 true Chr02: 27816787-27822999 Phaseolus vulgaris
Phvul.002G134300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 27816787-27818786 Phaseolus vulgaris
Phvul.002G134300 2.0kb downstream 2.0kb downstream 6213 true Chr02: 27818787-27824999 Phaseolus vulgaris
Phvul.002G134300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 27823000-27824999 Phaseolus vulgaris
Phvul.002G134300 5.0kb upstream 5.0kb upstream 9213 true Chr02: 27813787-27822999 Phaseolus vulgaris
Phvul.002G134300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 27813787-27818786 Phaseolus vulgaris
Phvul.002G134300 5.0kb downstream 5.0kb downstream 9213 true Chr02: 27818787-27827999 Phaseolus vulgaris
Phvul.002G134300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 27823000-27827999 Phaseolus vulgaris
Phvul.002G134300 10.0kb upstream 10.0kb upstream 14213 true Chr02: 27808787-27822999 Phaseolus vulgaris
Phvul.002G134300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 27808787-27818786 Phaseolus vulgaris
Phvul.002G134300 10.0kb downstream 10.0kb downstream 14213 true Chr02: 27818787-27832999 Phaseolus vulgaris
Phvul.002G134300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 27823000-27832999 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305240 5265 Fabidae View MSA
124065529 5270 Rosid View MSA
123740104 5271 Pentapetalae View MSA
122789315 5272 Eudicot View MSA
122043076 5273 Angiosperm View MSA
121347128 5274 Embryophyte View MSA
123424055 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.397 0.0 44.9772   High
cufflinks 11.2776 0.0 32.1358    
cufflinks 8.47394 0.0 24.8146    
cufflinks 12.9215 0.0 36.5203   High
cufflinks 6.83031 0.0 20.7334   Low
cufflinks 8.46967 0.0 24.8701    
cufflinks 6.97175 0.0 20.9298   Low
cufflinks 9.00661 0.0 26.1375    
cufflinks 7.06472 0.0 21.234    
cufflinks 8.01215 0.0 23.7331    
cufflinks 10.0937 0.0 29.2859    

0 Strain